Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30700 409 / 5e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 285 / 3e-90 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 281 / 7e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 278 / 9e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 275 / 8e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 275 / 1e-87 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 274 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 271 / 9e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 274 / 1e-85 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035815 [exp] 559 / 0 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 304 / 3e-97 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028837 [exp] 291 / 2e-96 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 286 / 4e-94 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 283 / 5e-90 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 270 / 9e-90 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 281 / 1e-88 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 275 / 4e-88 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 274 / 9e-88 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181800 [exp] 436 / 8e-149 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 294 / 2e-94 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 292 / 4e-93 AT3G22690 582 / 0.0 unknown protein Potri.001G322100 [exp] 283 / 9e-91 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 280 / 4e-90 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 275 / 3e-88 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 275 / 7e-88 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 273 / 1e-87 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 278 / 2e-87 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 275 / 4e-87 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036596 pacid=23174481 polypeptide=Lus10036596 locus=Lus10036596.g ID=Lus10036596.BGIv1.0 annot-version=v1.0 ATGATTTCTGGATATGGTCTTCATGGACATGGGCAGGAAGAACTGAAGCTTTTCTATAAGATGTTGAACTCTGGTATTTCCTTGTCTAAGGTAACTTTTC TTTCCATCTTATACGCCTGCAGTCATTCGGGTTTGGTTAAAGAAGGAGATGAAATTTTTAAATCAATGATCCGTGACCATGGTTTTCAACCAATGACTGA GCACTATGCTTGTATGGTTGATATCCTTGGGCGCGCTGGAAAGTTGGAGGAAGCTTTGGGTTTCATAAAAGGAATCCCGGAGAATCCCACCCCTCCAATA TGGTCAACGTTGCTTGGTGCTTGCATGATCCATAAAGATACGAACATGGCTCGTCTGGCTTCCGAAAAGCTTTTTGAATCGGACCCAGAAAATATGGGGT ACTATGTTCTGATGTCAAATATCTACTCATCTGAGAGGAACTATCCGGGAGCTGCATTTGTGAGGCAAGTAGCTAAGAAGAGAAAACTGGCAAAGACTCC AGGATGTACTCTGGTTGAGATTCATCAGACACCTCATGTCTTCAAAGCAGGTGACTGGTATCATCCACAATCAACAGCTATACATGCAGAGCTAGAGAAA TTGAATGCCAAGATGAAGCAAGCAGACACAATAACGGCTTTGCATGATGTTGAGGAGGAAGAGAAGGAACTGATGATGAAGGTTCACAGTGAGAAGCTAG CCATTGCTTTTGGTCTAATATCTACCGAGCCTGGAAAGATAAGGATCTTCAAGAATCTCCGCATTTGTCAGGACTGTCATACAGCGTCCAAGTACATATC TAAGATTACACACAGAGTTATTGTAGCTAGGGATGCCAATCGATTCCATCATTTCAAGGATGGATACTGTTCTTGTGGAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10036596 pacid=23174481 polypeptide=Lus10036596 locus=Lus10036596.g ID=Lus10036596.BGIv1.0 annot-version=v1.0 MISGYGLHGHGQEELKLFYKMLNSGISLSKVTFLSILYACSHSGLVKEGDEIFKSMIRDHGFQPMTEHYACMVDILGRAGKLEEALGFIKGIPENPTPPI WSTLLGACMIHKDTNMARLASEKLFESDPENMGYYVLMSNIYSSERNYPGAAFVRQVAKKRKLAKTPGCTLVEIHQTPHVFKAGDWYHPQSTAIHAELEK LNAKMKQADTITALHDVEEEEKELMMKVHSEKLAIAFGLISTEPGKIRIFKNLRICQDCHTASKYISKITHRVIVARDANRFHHFKDGYCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	3.7	0.9016
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	5.8	0.8934
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	6.2	0.8750
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	7.3	0.8485
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	8.9	0.8725
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	8.9	0.8729
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	9.1	0.7803
					Lus10022721 [exp]	11.2	0.8604
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10024298 [exp]	11.5	0.7725
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036597 [exp]	11.8	0.6768

Compare expression of checked genes

Lus10036596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.