Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57830 151 / 7e-42 Protein of unknown function, DUF593 (.1) AT4G30830 125 / 2e-32 Protein of unknown function, DUF593 (.1) AT2G24140 102 / 9e-25 Protein of unknown function, DUF593 (.1) AT5G06560 87 / 1e-18 Protein of unknown function, DUF593 (.1) AT3G54740 83 / 2e-17 Protein of unknown function, DUF593 (.1.2) AT1G70750 57 / 1e-08 Protein of unknown function, DUF593 (.1) AT5G16720 57 / 2e-08 Protein of unknown function, DUF593 (.1) AT3G11850 56 / 2e-08 Protein of unknown function, DUF593 (.1.2) AT4G13630 54 / 9e-08 Protein of unknown function, DUF593 (.1.2) AT1G18990 54 / 1e-07 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035817 [exp] 617 / 0 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 273 / 2e-88 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 268 / 1e-86 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 89 / 5e-19 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 88 / 1e-18 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 86 / 6e-18 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 84 / 2e-17 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 64 / 1e-10 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 54 / 9e-08 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103500 [exp] 248 / 2e-78 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 236 / 2e-73 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 87 / 3e-18 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 84 / 1e-17 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 61 / 8e-10 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 60 / 1e-09 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 58 / 8e-09 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 57 / 1e-08 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 54 / 9e-08 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 53 / 2e-07 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10036599 pacid=23174687 polypeptide=Lus10036599 locus=Lus10036599.g ID=Lus10036599.BGIv1.0 annot-version=v1.0 ATGGCGGAAACTCAGCTGCCAGAAAGTGATGGCGTTAGTCTAAGAGAAGCTCTCCACGCACAGCAGCAGCTCCTGCAGAAGCTCTACCGCGAACTAGATG ACGAAAGGGAAGCTGCTGCAACGGCAACGAGTGAAGCTATGTCGATGATCCTACGACTGCAAGGAGAGAAAGCTGAATTGAAGATGGAAGCGAATCAGTA CAAGAGGATGGCTGAGGAGAAGATGTGTCATGCCGAAGAGGCATTGGCTCTCTGCGAGGATATCATGTATCAGAAAGAGATGGAGATCGCTTCCCTTGAG TTCCAGATTCAGTCTTACAGGAAGAGACTCATTAGCTTAGGATTTGCTGATGCCACCGTATCAGAACAAGGTGGTATCGTCCATGGCACTGTGAGGAGGC TTAACTCGTTGCCTCAGGCGAAGAAAGCCGGGCTTGATAAGAAACAAGTTGCTATTGATGAGGAAGCTGTGTTCCAAGTAGAGATTACTCACGACTCAGG CAGGAAATCAGGTGGAGACATCAATTCTTACTGGGAAAAGATCAGGAGACTGGACGGACGACTTAAGGAGATTTCGGATGGAAGAAGCAAAGATAATGGC AAGAACAATTCCACAATCTGGAGAGGTGGCACCTGGTCTCATTCTTTGTATTCACAACTTAGGGAAAACTCAAATTCACAAGACCTGGACAATAATGTAG ATAGTCAAGTGTCATGCGAGTTGCCCCGGAATCAAAAACCTCATATGCAATGTGAGGAGGGTAATGAGGAGCAAGTGAAGGCAGTTCTTCCGTATTGTAC AGACAAGGAGAAAAAGAAAGCTCCAAAAGATGCACCAGTTGTCATTGACAATGGTTTCCCCCCTGCTCCTCCTGCTGTTCATTCATCGGTCACTCCAAGT GATTACCATAATATGTTGCGACAAATCGAGAGACTTGAGCGTACGAGGAGCATTGTGGGGCAGCAGCAGCAGGAGAACATTGTTTCCCTAGGAGGAGAAG AGATGCAGCTGTTGAAGGCAATTCAGGAACAACTGAGCGGGATACAGACTCAACTGACAAGTAAAAAAGATAGAACGCCTGTCGCTCGAGATGAACCCTG TCTTGATGTTCTCCAGGAGGCAATGCTGTACTTCTGGCTTTGA
AA sequence Show only first row Show all	>Lus10036599 pacid=23174687 polypeptide=Lus10036599 locus=Lus10036599.g ID=Lus10036599.BGIv1.0 annot-version=v1.0 MAETQLPESDGVSLREALHAQQQLLQKLYRELDDEREAAATATSEAMSMILRLQGEKAELKMEANQYKRMAEEKMCHAEEALALCEDIMYQKEMEIASLE FQIQSYRKRLISLGFADATVSEQGGIVHGTVRRLNSLPQAKKAGLDKKQVAIDEEAVFQVEITHDSGRKSGGDINSYWEKIRRLDGRLKEISDGRSKDNG KNNSTIWRGGTWSHSLYSQLRENSNSQDLDNNVDSQVSCELPRNQKPHMQCEEGNEEQVKAVLPYCTDKEKKKAPKDAPVVIDNGFPPAPPAVHSSVTPS DYHNMLRQIERLERTRSIVGQQQQENIVSLGGEEMQLLKAIQEQLSGIQTQLTSKKDRTPVARDEPCLDVLQEAMLYFWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	0	1
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10030704 [exp]	1.0	0.9055
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	2.8	0.9030
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	8.4	0.8692
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	11.5	0.8821
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	13.4	0.8701
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	15.4	0.8739
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	17.7	0.8297
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	19.4	0.8452
AT1G22140			unknown protein		Lus10025627 [exp]	20.9	0.8458
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	21.3	0.8726

Compare expression of checked genes

Lus10036599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.