Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30825 389 / 5e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 117 / 5e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 114 / 3e-28 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 112 / 1e-27 RPF2 rna processing factor 2 (.1) AT5G42310 112 / 1e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 111 / 4e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 109 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 105 / 5e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39980 103 / 1e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 103 / 2e-24 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035818 [exp] 533 / 0 AT4G30825 1049 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 114 / 5e-28 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 113 / 1e-27 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 108 / 3e-26 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10016009 [exp] 107 / 1e-25 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015530 [exp] 107 / 1e-25 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012268 [exp] 106 / 2e-25 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10020002 [exp] 104 / 8e-25 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003657 [exp] 103 / 3e-24 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005100 [exp] 433 / 4e-146 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 120 / 3e-30 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 112 / 2e-27 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 110 / 1e-26 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.001G297300 [exp] 108 / 4e-26 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 107 / 9e-26 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G250200 [exp] 104 / 9e-25 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G075700 [exp] 103 / 2e-24 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 103 / 2e-24 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 101 / 1e-23 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036600 pacid=23174465 polypeptide=Lus10036600 locus=Lus10036600.g ID=Lus10036600.BGIv1.0 annot-version=v1.0 ATGTATATTAAAGCTGGTTCTTTGAAAGACGCTTGTGCTGTCTTGGAAACAATGGAGAAACAGAAAAACATAGTTCCTGATGTTTATCTGTATCGAGACA TGCTACGAGTTTACCAACAGTGTGGCCTGGTGAACAAGTTGAAGGATCTCTACTATAACTTGTTAAAAAGTGTGATTGTATGGGATCAGGAATTGTACAG GTGCGTCATAAACTGTTGTGCCAATGCTCTCCCAGTTGATGAGCTTTCCAGACTTTATAGTGAAATGATTAGGAAGGGTTTTGTTCCCAATACTGTCACT TTGAATGTCATGCTTAATGTTTACGGAAGATCAGAGCACTTTGAGGAGGCTGAGGAGATGCTGGAAACGGCGAAAAAACGAGGTCTAGTTGATGCCATCT CTTACAACACTATGGTTGCTGCCTATCGTCGCAGTAAAGACTTCAAGATGATGTCCTCAACCGTACGGACAATGCAGCTTGATGGATTTTCTGTTTCGCT CGAAGCATTTAACTGCATGTTGGATGGATATGGTAAAGAAGGTCAAATGGGGAGTTTCCAGAATGTATTGAAGAGGATGAAGGAATCAAATTCGTCCCTA GACAATTATACTTACAACATCATGATGAACATCTACGGAGAACAAGGATGGATTGAAGAAGTTGAACAAGTGCTCAAGGAACTGAAAGAATGCGGATTGA GACCAGATATAGTCAGCTACAACACATTGATAAAAGCATATGGGATTGCTGGGATGGTTAAAGAGGCAGTGAGCTTGATGAAGGAAATGAGAGAGAATGG GGTAGAACCCAATAAGATCACGTACAATAATTTGATTATTGCTTTGCAGAAGAATGACGAGTATTTGGAATCTGTCAAATGGTCATTGTGGATGAAGCAG ATTGGTATGTGA
AA sequence Show only first row Show all	>Lus10036600 pacid=23174465 polypeptide=Lus10036600 locus=Lus10036600.g ID=Lus10036600.BGIv1.0 annot-version=v1.0 MYIKAGSLKDACAVLETMEKQKNIVPDVYLYRDMLRVYQQCGLVNKLKDLYYNLLKSVIVWDQELYRCVINCCANALPVDELSRLYSEMIRKGFVPNTVT LNVMLNVYGRSEHFEEAEEMLETAKKRGLVDAISYNTMVAAYRRSKDFKMMSSTVRTMQLDGFSVSLEAFNCMLDGYGKEGQMGSFQNVLKRMKESNSSL DNYTYNIMMNIYGEQGWIEEVEQVLKELKECGLRPDIVSYNTLIKAYGIAGMVKEAVSLMKEMRENGVEPNKITYNNLIIALQKNDEYLESVKWSLWMKQ IGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	0	1
AT1G44920			unknown protein		Lus10007720 [exp]	3.2	0.9239
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	4.0	0.9277
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	6.3	0.9214
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	9.0	0.9229
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	10.1	0.9204
AT3G47070			unknown protein		Lus10001204 [exp]	11.0	0.9228
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10025025 [exp]	11.8	0.9157
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	13.0	0.9196
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	14.0	0.9138
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	14.7	0.9161

Compare expression of checked genes

Lus10036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.