Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30825 499 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 130 / 9e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 120 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 119 / 2e-28 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 117 / 1e-27 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39980 114 / 8e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 106 / 4e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G12100 105 / 1e-23 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G74750 105 / 1e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 103 / 2e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035818 [exp] 1009 / 0 AT4G30825 1049 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034342 [exp] 114 / 9e-27 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041429 [exp] 114 / 2e-26 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042081 [exp] 110 / 5e-25 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 108 / 9e-25 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 108 / 1e-24 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 108 / 1e-24 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 108 / 2e-24 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 107 / 3e-24 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005100 [exp] 606 / 0 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G075700 [exp] 124 / 7e-30 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 117 / 2e-27 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 115 / 6e-27 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G150100 [exp] 114 / 9e-27 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 114 / 1e-26 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 111 / 7e-26 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 111 / 9e-26 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 110 / 3e-25 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G271400 [exp] 109 / 3e-25 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036601 pacid=23174548 polypeptide=Lus10036601 locus=Lus10036601.g ID=Lus10036601.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTGAAACTCTCCATTTCTTTCGAAGCTGAAAGATCAAACTTTTTTGCAAACCCACTTCAGTTTCCTGCTCATTGCTCAGTCTTCTCCATTA TTACCTTCAATAGAGCTCCTTCTATAACTTGCTCAGGTAGATTCTATCTTTCCAGAGTCTCCCCAATCGGAACTGAATTGCAGGATGTGGTGAATGAGAG TGTTAGAGGGGATTTGAGCATTCAAAAGAGGAAAGGAGTCAAAGGAAGTAGGATATGGACGAAAACGAATAAGGGTGTTAAACCTGATTCTACGAGCAAG CTAGAAAAGGATGTTCTTTTTGTTTATGAAGGTGGGCTGGATGCGAATTATGGCTTCATTCAATCTGCTGACTTAAGCCTACACCACTGCAATTTTGTGC TGAAGAGGTTGGAGAAGGAAAGTACCGATAGCAAAACGTTGTGTTTCTTTGAGTGGATGAGGAAGCATGGCAAGTTGGTACGTAATGTGGCTGCTTACAA TGTGATTCTTCGAGTTTTTGGTAGGAGAAGAGATTGGGAATCTGCAGTTAGTGCAATCGAGGAAGTGACTAAAGACTGTAGGGATCAGGTTGATTTTAGG GTTTTCAACACACTCATTTTTGCATGTTGTAAGCAAGGCAATGTGAGGTTGAGTAGTAAATGGTTCAGGATGATGCTGGAGCTTGGAATTCATCCAAATG TCGCCACATTTGGAAAGCTCATGGGGCTTTACCAAAAGGGTAGGAATGTTAGGGAGGCAGAGTTTGCATTTGGCCAAATGCGGAGTGTTGGCATAACGTG TGAGTCTGCTTACTCTTCCATGATTACCATCTATACTCGTTTAAGTTTGCATGCTAAGGCTGAGGAGGTTATTCACTTGATGAATGAAGACGGCGTGGTG TTGAATTTGGAGAATTGGTTGGTTGTGATTAATGCATATAGTCAGAGTGGGAAGTTAGTTGAGGCTGAGAAGATGTTTGTTTCCATGCAAGAGGCTGGCT TTGACCCAAATATTGTAGCATATAACACATTGATAGCCGGGTATGGGAAAGTATCTAACATGATTGCTGCTCAACGCCTGTTCATAGCCATCAACGATGC AGGTTTGCACCCTGATGAAACTACTTATCGTTCCATGATTGAAGGTTGGGGCCGAATTGACCACTATAAGGAGGCAGGATGGTACTATAAGGAGCTGAAA CGATTAGGGTTTAAGCCGAACTCCTCCAATTTATACACTTTGATCAGTTTGCAAGCTGCACATGGTGATGAAGTGGGTGCTATTCAAACTTTGAACGATA TGCTGGAAATGAAATGCCAATATTCCTCGATCGTCGGCACAGTAGTGAAAGCATATGAAAGAGTAGGAAGGATTGACAAAGTCCCTCTTCTTTTGGTAAA CAAACCTTCTTGCTCTGAACAGTCCTTGATCGATTTGCAGCCTTCGCTCTATCAACACATTCTTGTAAACCAAACTTCTTGCTCCATTGTCGTTATGGCT TATGTGAAGAACAACTTGGTGGATAATGCCATCAAAAATCTTGTGGAATTTCCTTGGATTTGA
AA sequence Show only first row Show all	>Lus10036601 pacid=23174548 polypeptide=Lus10036601 locus=Lus10036601.g ID=Lus10036601.BGIv1.0 annot-version=v1.0 MASLKLSISFEAERSNFFANPLQFPAHCSVFSIITFNRAPSITCSGRFYLSRVSPIGTELQDVVNESVRGDLSIQKRKGVKGSRIWTKTNKGVKPDSTSK LEKDVLFVYEGGLDANYGFIQSADLSLHHCNFVLKRLEKESTDSKTLCFFEWMRKHGKLVRNVAAYNVILRVFGRRRDWESAVSAIEEVTKDCRDQVDFR VFNTLIFACCKQGNVRLSSKWFRMMLELGIHPNVATFGKLMGLYQKGRNVREAEFAFGQMRSVGITCESAYSSMITIYTRLSLHAKAEEVIHLMNEDGVV LNLENWLVVINAYSQSGKLVEAEKMFVSMQEAGFDPNIVAYNTLIAGYGKVSNMIAAQRLFIAINDAGLHPDETTYRSMIEGWGRIDHYKEAGWYYKELK RLGFKPNSSNLYTLISLQAAHGDEVGAIQTLNDMLEMKCQYSSIVGTVVKAYERVGRIDKVPLLLVNKPSCSEQSLIDLQPSLYQHILVNQTSCSIVVMA YVKNNLVDNAIKNLVEFPWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	0	1
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	2.6	0.9068
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	3.7	0.9251
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	4.1	0.9272
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	5.5	0.9207
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	6.1	0.8690
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	6.6	0.9166
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	8.1	0.8709
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	8.4	0.8977
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	8.5	0.9071
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	8.9	0.9115

Compare expression of checked genes

Lus10036601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.