Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30780 511 / 5e-176 unknown protein AT2G24100 475 / 1e-163 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT3G05770 132 / 2e-33 unknown protein AT1G54300 120 / 7e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035819 [exp] 1150 / 0 AT4G30780 514 / 3e-177 unknown protein Lus10041622 [exp] 377 / 3e-125 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 373 / 2e-123 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 177 / 1e-49 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 158 / 2e-40 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 146 / 2e-37 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 144 / 9e-37 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10007704 [exp] 108 / 8e-28 AT4G30780 74 / 1e-16 unknown protein Lus10024256 [exp] 59 / 1e-09 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102800 [exp] 749 / 0 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 747 / 0 AT4G30780 503 / 2e-173 unknown protein Potri.003G185050 [exp] 518 / 5e-180 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 488 / 4e-168 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.013G009000 [exp] 211 / 6e-61 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 180 / 1e-49 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036602 pacid=23174568 polypeptide=Lus10036602 locus=Lus10036602.g ID=Lus10036602.BGIv1.0 annot-version=v1.0 ATGGTTCAGTTGATGAAATCGGACAAAATTCAGCCCGGCGCAACTGAAGCTCCGTCGTCGATCGGGAGCAAGGTTTCGCCGGTGAAGCTTGAGATCGTCG AGGATCCGTTGGAGGAAGAGCACGGCCCTCTTAACAAGCGATCTAAGACATCTCGGTCTCTTCAACAGTGGGGTGCCGGTGCCAATGCATTTCCTGTTCC TCCGTCGCAGTTCAATCCACTAGATGAGCCGAGCCCTCTTGGATTGAGGCTGAGGAAGAGTCCATCACTGTTGGATTTGATCCAGATGAAGCTCTCTCAG GGGACTGCTTCTTCAACTCCAGGAGCTAAGGAGAGCGAGAAACCGAGCTCTGGAGTAAAGAAAGAGGGCAAAGGGGCTGGCGCGTCCAGCTCGATTGATA AACTCAAGGCTTCGAATTTTCCTGCTTCTTTGCTTAGGATTGGTTCTTGGGAGTATACGGCAAGATATGAAGGGGAGTTGGTGGCGAAGTGTTATTTTGC GAAACATAAGCTTGTTTGGGAAATTCTCGAAGGTGGCCTCAAGAGTAAGATTGAAATCCAGTGGTCGGATATTATGGGTCTGAAAGCGACCGTCCCGGAA GATGGACCTGGGACGTTGAATGTTGTGCTTGCCAGACAGCCACTTTTCTTTAGGGAAACTAATCCGCAACCTCGAAAGCACACATTGTGGCAGGCAACTA CAGATTTTACCAATGGACAAGCTAGCATACACAAGCAACATTATCTGCAATGCCCTCAAGGGATGCTGAATAAACATTTTGAAAAGCTCATACAATGTGA TATGCGCTTGAACTTCTTAAGCGAGCAACCAGATATTGCCTTGGATTCACCATTCTTCGAACAACGAGCATCTGTTTTCAATGAGCTTGATGAAACCAAA GATCAAGAGCTCAATCCAGTGGAGAATGGCCAAGGGTCATTTGCAGCTGGCTTTCAAAATCTTGCATCACCATCTGCAGGTCATTCCTCTTCCTTGGATC TAAACAGAGGGGATCATACTGGCACAACATCAGAACATATGTCCCGTGAAGCTCCTTCACCGAGCTCAGTCATGGACACTCATGCAATTGAAGGAAGAGG AAATTTTGAGTCTGTGGATTCAAGAGCACCAAGGAACTGGGATCAGATGAGAGTGCCAGGCCTGACACCATCGATGTCGATGAGTGATCTTATGTGCCAC CTTGGAAACTGCATCTCTGAACAGATGAACTCCGGGAATGCATCCCTGACTGCTGATGCAGAAGAAAGTCGAGAGATATTGTCAGATATTGCCCAGTATC TTCTTAGTGACACCCAACTAACGACAGCCTCTGATGAGAAAAGGCTAATGGCCAGGGTCGACTCTCTCTGTTGCCTTTTACAAAAAGATCCATCTTCGTC ACAGAATCTGCAGACCATCGGAGAGGGCAGTAACAAAGAATCTGAGAATGGGGACTCGACCTTTGATGAGAAAAGGCTAATGGCTAGGGTCAACTCTCTG TGTTGCCTTCTACAGAAGGATCCTACTCCATCCCAGAATCTGCAGATAACTGGAGAGGGCCGTAATGAAGACTCTGATAACGGGGACAAGATGTTTCAAC TGGAACAACGAAACGGAACAATGAAAGAAGCATCCAGCAGCAAGCAGTCGATGGGCATGTCGAGGAAAGACTCTTTCGGGGAGCTGCTGCTTCATCTACC TCGCATAACATCTCTTCCCAAGTTCTTGTTCCACATATCGGAGGAACATGGAGATGATGAGAGTCGATAG
AA sequence Show only first row Show all	>Lus10036602 pacid=23174568 polypeptide=Lus10036602 locus=Lus10036602.g ID=Lus10036602.BGIv1.0 annot-version=v1.0 MVQLMKSDKIQPGATEAPSSIGSKVSPVKLEIVEDPLEEEHGPLNKRSKTSRSLQQWGAGANAFPVPPSQFNPLDEPSPLGLRLRKSPSLLDLIQMKLSQ GTASSTPGAKESEKPSSGVKKEGKGAGASSSIDKLKASNFPASLLRIGSWEYTARYEGELVAKCYFAKHKLVWEILEGGLKSKIEIQWSDIMGLKATVPE DGPGTLNVVLARQPLFFRETNPQPRKHTLWQATTDFTNGQASIHKQHYLQCPQGMLNKHFEKLIQCDMRLNFLSEQPDIALDSPFFEQRASVFNELDETK DQELNPVENGQGSFAAGFQNLASPSAGHSSSLDLNRGDHTGTTSEHMSREAPSPSSVMDTHAIEGRGNFESVDSRAPRNWDQMRVPGLTPSMSMSDLMCH LGNCISEQMNSGNASLTADAEESREILSDIAQYLLSDTQLTTASDEKRLMARVDSLCCLLQKDPSSSQNLQTIGEGSNKESENGDSTFDEKRLMARVNSL CCLLQKDPTPSQNLQITGEGRNEDSDNGDKMFQLEQRNGTMKEASSSKQSMGMSRKDSFGELLLHLPRITSLPKFLFHISEEHGDDESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30780			unknown protein		Lus10036602 [exp]	0	1
AT4G30780			unknown protein		Lus10035819 [exp]	1.0	0.8993
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	8.2	0.8982
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	26.0	0.8894
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	26.1	0.8551
AT2G31090			unknown protein		Lus10017667 [exp]	28.8	0.8905
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	36.1	0.8529
					Lus10039819 [exp]	36.9	0.8617
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	37.6	0.8617
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	40.5	0.8571
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	42.3	0.8780

Compare expression of checked genes

Lus10036602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.