Plant FIBer expression Database

Lus10036605 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30850 258 / 1e-83 HHP2 heptahelical transmembrane protein2 (.1.2)
AT5G20270 251 / 3e-81 HHP1 heptahelical transmembrane protein1 (.1)
AT2G24150 243 / 7e-78 HHP3 heptahelical protein 3 (.1)
AT4G37680 166 / 9e-48 HHP4 heptahelical protein 4 (.1.2)
AT4G38320 159 / 4e-45 HHP5 heptahelical protein 5 (.1)
AT2G40710 89 / 5e-22 Haemolysin-III related integral membrane protein (.1)
AT4G38290 74 / 4e-16 Haemolysin-III related integral membrane protein (.1)
AT1G34640 71 / 3e-15 peptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035823
[exp]
273 / 4e-84 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10038120
[exp]
204 / 9e-63 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1)
Lus10008057
[exp]
172 / 4e-50 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1)
Lus10010605
[exp]
168 / 2e-48 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2)
Lus10011713
[exp]
149 / 3e-41 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2)
Lus10025206
[exp]
148 / 1e-40 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2)
Lus10007709
[exp]
0 / 1 ND 47 / 2e-10
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G102400
[exp]
281 / 1e-92 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2)
Potri.018G124754
[exp]
190 / 4e-57 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1)
Potri.T124407
[exp]
190 / 4e-57 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1)
Potri.006G064400
[exp]
185 / 4e-55 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
Potri.014G006000
[exp]
167 / 5e-48 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2)
Potri.007G005800
[exp]
164 / 6e-47 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2)
Potri.002G096700
[exp]
77 / 3e-17 AT1G34640 94 / 3e-26 peptidases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF03006 HlyIII Haemolysin-III related
Representative CDS sequence
>Lus10036605 pacid=23174508 polypeptide=Lus10036605 locus=Lus10036605.g ID=Lus10036605.BGIv1.0 annot-version=v1.0
ATGGTGGTGGTCGGGGTTTGGACGCACTCTCTGACCAAAGTTGGAGCCACTTACATCGTTGGTATGTTTGGGATCGCCGGTATTCTTTTGCCTGACTGGG
ATTTCTTCGACCGAGATTACTCTCGCTGGCTCTTCCCCGTTAACGAACAAGAAAAGAAGCACGCTCTTGCTCTCCAATCCAGATCCGCTCTGCCGGAACC
TCGCCCGAGGAGGGAGGAAGGAAGGATGAGCAGTAATTGTCGCAAGGCAAGCGCCGCGGCAGCCAAGGATGAGAAAGAGGACGGGGGAATTAGCTACGAT
CGGAACAACAACAAGAAGAAGAAAAAATTCGAGAGGAGACTGGTCAAATTCAAGGACCTTCCGGAATATTTGAAGGACAATGAGTTCATCCTTGACCATT
ACCGGTCGGAATGGCCGCTGCGTGACGCGATATGGAGCGTCTTCTCCTGGCACAACGAAACCCTCAATATCTGGACAGGTCGAGATTCTGGACTGTTAAT
TGCGACAATGATCATCAATGGCACCGGCCTCAATGTCTCCCTCACTTTCCACCTCCTAGCCTGCCATTCCAAGACATTGAATCTCTTCTTCTGGCGACTC
GACTATGCTGGAATTTCCCTCTTGATAGTATCGTCCTTCTACGCACCGATCTACTACATCTTCCACTGCAGCCCCATTGCACGGTTCGTCTACCTCAGCG
TCATAACCATCGTTGGAGCCCTTGCCATCGTCACACTCCTTTCCCCTGCACTTTCTTCTCCAACGTACAGAAGATTCAGGGCTACACTCTTCCTCATCAT
GGGATTCTCCGGGATCGTACCTGCTGGACATGCGGTTTATCTACACTGGGGACATCCCTTTGTATTCATCTCAGTTCTTCTTGAAGTAATCATGGCGGTG
TTATACGCTGCTGGTGCTGGATTTTACGTCAGTCGAATCCCAGAACGTTGGAAGCCTGGTGCATTTGACATTGCTGGACAGAGTCACCAGATTTTCCATG
TGTTTGTTGTTCTAGCTGCCATAGCTCACAGTTTCGCCACCCTGATCGCCATGGATTTTCGGCGGAGATCTCCTTCATGCTCCTGTTAA
AA sequence
>Lus10036605 pacid=23174508 polypeptide=Lus10036605 locus=Lus10036605.g ID=Lus10036605.BGIv1.0 annot-version=v1.0
MVVVGVWTHSLTKVGATYIVGMFGIAGILLPDWDFFDRDYSRWLFPVNEQEKKHALALQSRSALPEPRPRREEGRMSSNCRKASAAAAKDEKEDGGISYD
RNNNKKKKKFERRLVKFKDLPEYLKDNEFILDHYRSEWPLRDAIWSVFSWHNETLNIWTGRDSGLLIATMIINGTGLNVSLTFHLLACHSKTLNLFFWRL
DYAGISLLIVSSFYAPIYYIFHCSPIARFVYLSVITIVGALAIVTLLSPALSSPTYRRFRATLFLIMGFSGIVPAGHAVYLHWGHPFVFISVLLEVIMAV
LYAAGAGFYVSRIPERWKPGAFDIAGQSHQIFHVFVVLAAIAHSFATLIAMDFRRRSPSCSC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30850 HHP2 heptahelical transmembrane pr... Lus10036605
[exp]
0 1
AT5G66800 unknown protein Lus10009349
[exp]
9.3 0.7638
AT2G40435 unknown protein Lus10025257
[exp]
15.7 0.7500
AT5G36250 Protein phosphatase 2C family ... Lus10012218
[exp]
17.7 0.7127
AT5G10660 calmodulin-binding protein-rel... Lus10042442
[exp]
18.2 0.6401
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10023417
[exp]
23.5 0.7536
AT4G35170 Late embryogenesis abundant (L... Lus10022644
[exp]
24.4 0.7527
AT3G49730 Tetratricopeptide repeat (TPR)... Lus10039021
[exp]
25.5 0.7063
AT5G57970 DNA glycosylase superfamily pr... Lus10026083
[exp]
26.1 0.7336
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Lus10037128
[exp]
30.0 0.7490
AT1G03080 kinase interacting (KIP1-like)... Lus10006607
[exp]
31.5 0.6831

Lus10036605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.