Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57990 527 / 3e-174 UBP23 ubiquitin-specific protease 23 (.1) AT2G24640 238 / 5e-69 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 236 / 4e-67 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 226 / 1e-61 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 221 / 4e-61 UBP17 ubiquitin-specific protease 17 (.1) AT5G46740 211 / 2e-57 UBP21 ubiquitin-specific protease 21 (.1) AT3G14400 207 / 2e-56 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 210 / 4e-56 UBP16 ubiquitin-specific protease 16 (.1) AT4G17895 202 / 1e-54 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 138 / 3e-35 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035825 [exp] 1612 / 0 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 256 / 6e-74 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 254 / 3e-72 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 257 / 4e-71 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10020116 [exp] 246 / 3e-70 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 245 / 8e-70 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 223 / 2e-60 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 200 / 3e-54 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 195 / 1e-52 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185200 [exp] 637 / 0 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.003G092400 [exp] 265 / 4e-76 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 261 / 2e-74 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G009500 [exp] 248 / 2e-70 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 244 / 7e-70 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 214 / 4e-58 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 216 / 6e-58 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G378900 [exp] 212 / 6e-57 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.002G104800 [exp] 213 / 7e-57 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.001G394600 [exp] 204 / 7e-56 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10036607 pacid=23174663 polypeptide=Lus10036607 locus=Lus10036607.g ID=Lus10036607.BGIv1.0 annot-version=v1.0 ATGGAAAGTTTAGTAGCTACGGAGCAGATGAGTGATGCGGCGGCAGCGATGGTCGTCAAAGATGGATTTTCGTCGTCGTCTATCTCCGTTGCTTCTACTA CTATTTCTTCCTCTTTTATTGCTTTGCAGCGGAGGATTGAGTTTCATCCCGCGAGGAAGCAGTACAGTGGATTCAGTAGCGGTCGGGATTTCGCGATTGA GACGCTGAACCCGGATTCGGAGAAGAGGCCATCAGAATTGGAGGAGTCGACGGCGGCGGCGGCGGTAGGGTCGAGGCAGGTGGCGGCGAGGAGAGGTGAT GCGGCGATGGATTTGTTGGAGAGTGAGATCAGCACTTTCGATATTACTTTTCAGAGGATTGGTGCAGGTCTGCGGAATATCGGAAATACTTGTTTTCTCA ACTCTGTGTTGCAATGTCTGACATATACAGCACCTTTGGCAGCGTATTTACAAACTGGCAAGCACAAGAGTTCCTGCCGTATTTCTGGCTTCTGTGCGTT GTGTGCCTTCCAGAAACACGTTAGTCGTGCTTTACAATCAACTGGGATGTCATTCGTACCTGATCTTGTTTCAAAGATGAGGTGTGTATCTCGCACTCTC AAAGTATCTAAGCAAGAAGATGCACATGAGTACATGGTAAACTTGCTAGAGTCGATGCATAAATGCTGCTTGCCATCTGGAGTGCATAGTGAGTCTCCAG CTGCTTATGAAAGGAGTTTGGTGCACAAAATCTTTGGTGGTCACTTGCGCAGTCAGGTGGAATGCCAGCAATGCTCTTACTGCTCTGATAAATTTGATCC GTTTTTAGACTTGAGTCTTGAAATAAATAGAGCTGAGGCCTTACCTACAGCACTCAAGCACTTCACGGCTGCAGAGTTGTTGGATGGTGGAGAGAAGCAT TATCAATGTCAGCGTTGCAAGCAGAAAGTGAGAGCCAAGAAAAGGCTTACAGTTCATAAACTACCCTATGTGTTGAGCGTTCATTTGAAGCGTTTTTCAT CACATGATCCTGGAAGAAAGATCCAGAAGAAAGTGTCGTACGAGCGTTCCTTGGACTTGAGACCTTTTGTTAGCAATCCTAATGAATGCAATTTGAAGTA CAGCTTATACGGTGTTCTAGTTCATTATGGAAGCAGCGCCCACTGTGGTCACTATGTCTGCTTTGTTCGCACCTCAAGTGGGATGTGGTACTCTCTTGAT GATGAAAAGGTTCACCATGTTGGCGAGAAGACTGTTTTGAACCAGAATGCTTATATGTTGTTTTATGTTCGCGACAGAAAGCATGTGGCTCCAAGGAAAT CACTCGATGGTGTTAAAAAAGAAAACAATACAACTGTTGGTGGTAACATCCTGAACATGGTTCCGAAGCAAATGCCAAATGGCGTCTCAATTGGTAACAA AAAGGCTTTGCTAGAGGTTGGCATGCCAAAGGAAGTATCAGACAAACAGAAGAATGAGAGACTACAGGCTGAATGTTCAACTACAAAAGCGGATTCAGTT TTGGCATCTTCTCCCAAGGAATTATTACTCCAGGACCCTGGTGCAGCGGAATGCTTGAAATCCTCAATGTCATCTATAATGGCCAATGTCAGCCTCTCAA CTACACTGAAAGGCTGCACCGTCTCAGGTGCCCATGGAACCAGTGTGACTACTGAAGCCTTGTCTAGCACTAATGACGAGCAGAAAATGGCAACCACCGG CTTGCTCTCCTCTGATAAGACTTCGCAAAAGACTGTCTCTGCTTCCGGCAATAAGACATCAAATACACCTGTTTTGGCTGCGTCAGTTGGTAATGAAGGT CAATTAGATTCTGATACATCGCTGACTAACCTGAACTCTCTTAAGAATCAGGAGGGAGGCGTTCCTGCTGATGATACTGGTGATCAGGTCGGCCCTGAAG TAAATTTTTTTGCCAAGGAGTTGTCAAGATCAAGAACTGTGATGCCTAGGTCAAATGAGTGTCATCTTCAAAATGCACCTCCTAGCAGTCCACAACAAAG TGCCAAAAAGAAGCTCCTCAAGCACCCTATTCATAAACTGCATTTTAGTACAAAGTTCTTAAGGATATCTCTACTTCAGGGGATAAGTAAGAAAAATAGA AAGCAGAAACACAGGAGTTCAGACACGCTGAAGCTCCTAAAACAACAGTTGGAGAAAAATGAGATTCCTTCATCTGAGATGGAGCGCTCGACATCCCAGA ACTTGGCTCAGCTATCCAGCCCTGCAGATTCTCAGGAGAAGACTAGTACTTGCTGTTTGAAGGAAGAATCTGCAGGTGTCAATGCTGAAGAAGATGTGTT AGGAGAATTCTCACAAAGAAACAGTCAGAATGGTACTGTCCTCGCAACAGCTGAACAATTGGCAACCAGCACCCTCGCAGAAAATGATAAAAGCGATGCA GCGCAGAATGGTGTGCGGAAAATTAGCTCACAGGATTTGAGGAAGGAGGCAGCCTCGGGGTGGAATGATTTAAAACCGCCTCGAAATCGGAATGCGAAAC GTGGGGAGATAGTCAACAGCATTGGTTACATAGGAGATGAGTGGGACGAAGAATACGATCAAGGTAAGCGGAAGAAGGTTCGAGCTTCAAAAGTAGAGTT CGGGGGACCAAATCTTTTCCAACAGGCTGCTCTTGAGAAATCAAAGCACCGCAGCAACGGACGGAAAGTAGATGGAAAGTGGATGCGTAAGGAGAAAAGA AGGCAATGA
AA sequence Show only first row Show all	>Lus10036607 pacid=23174663 polypeptide=Lus10036607 locus=Lus10036607.g ID=Lus10036607.BGIv1.0 annot-version=v1.0 MESLVATEQMSDAAAAMVVKDGFSSSSISVASTTISSSFIALQRRIEFHPARKQYSGFSSGRDFAIETLNPDSEKRPSELEESTAAAAVGSRQVAARRGD AAMDLLESEISTFDITFQRIGAGLRNIGNTCFLNSVLQCLTYTAPLAAYLQTGKHKSSCRISGFCALCAFQKHVSRALQSTGMSFVPDLVSKMRCVSRTL KVSKQEDAHEYMVNLLESMHKCCLPSGVHSESPAAYERSLVHKIFGGHLRSQVECQQCSYCSDKFDPFLDLSLEINRAEALPTALKHFTAAELLDGGEKH YQCQRCKQKVRAKKRLTVHKLPYVLSVHLKRFSSHDPGRKIQKKVSYERSLDLRPFVSNPNECNLKYSLYGVLVHYGSSAHCGHYVCFVRTSSGMWYSLD DEKVHHVGEKTVLNQNAYMLFYVRDRKHVAPRKSLDGVKKENNTTVGGNILNMVPKQMPNGVSIGNKKALLEVGMPKEVSDKQKNERLQAECSTTKADSV LASSPKELLLQDPGAAECLKSSMSSIMANVSLSTTLKGCTVSGAHGTSVTTEALSSTNDEQKMATTGLLSSDKTSQKTVSASGNKTSNTPVLAASVGNEG QLDSDTSLTNLNSLKNQEGGVPADDTGDQVGPEVNFFAKELSRSRTVMPRSNECHLQNAPPSSPQQSAKKKLLKHPIHKLHFSTKFLRISLLQGISKKNR KQKHRSSDTLKLLKQQLEKNEIPSSEMERSTSQNLAQLSSPADSQEKTSTCCLKEESAGVNAEEDVLGEFSQRNSQNGTVLATAEQLATSTLAENDKSDA AQNGVRKISSQDLRKEAASGWNDLKPPRNRNAKRGEIVNSIGYIGDEWDEEYDQGKRKKVRASKVEFGGPNLFQQAALEKSKHRSNGRKVDGKWMRKEKR RQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	0	1
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	2.6	0.9491
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	3.5	0.9395
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	4.6	0.9368
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	4.9	0.9287
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	5.9	0.9254
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	8.6	0.9006
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	8.9	0.9275
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	14.7	0.9070
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	15.7	0.9274
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	16.7	0.9220

Compare expression of checked genes

Lus10036607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.