Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24230 1082 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 698 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 360 / 2e-108 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 334 / 9e-99 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 322 / 9e-95 BRL1 BRI1 like (.1.2) AT5G45800 308 / 1e-93 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT3G13380 317 / 5e-93 BRL3 BRI1-like 3 (.1) AT2G01950 313 / 1e-91 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G02220 292 / 6e-85 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G33170 283 / 4e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035826 [exp] 1602 / 0 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029235 [exp] 356 / 4e-111 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10007287 [exp] 353 / 2e-110 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 337 / 8e-100 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 334 / 7e-99 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 333 / 2e-98 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 321 / 4e-94 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 317 / 5e-93 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 316 / 2e-92 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107400 [exp] 1225 / 0 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 1225 / 0 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G067900 [exp] 355 / 6e-111 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058500 [exp] 354 / 8e-111 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 347 / 9e-104 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 343 / 1e-102 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 339 / 1e-100 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 338 / 2e-100 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G472900 [exp] 333 / 2e-98 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.005G086500 [exp] 327 / 2e-96 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10036608 pacid=23174402 polypeptide=Lus10036608 locus=Lus10036608.g ID=Lus10036608.BGIv1.0 annot-version=v1.0 ATGGGTTTTGGTTTCTTCACCTTCACCTTGGTTATCACACTGTTCTTCACGATTTCATCTTGTCAAGAGCCCAATACAGATGAGTATTTCGTTTCTGAGT TCTTTAAGAAGATGGGTTTAGCTTCTTCTTCACAGCATTACAGCTTCTCAGGTCCTTTCTGTTCATGGCAAGGTGTGCTTTGCGACGCGGAGAAAGAGCA TGTGGTCGGTTTAACTGCTTCTGGTCTAGGCCTTTCTGGCCCAATTCCTGACATCACAATTGGGAAGCTAAGCAAGCTTCAAACTTTGGATCTCAGCAAC AACAAAATCACTGCTTTGCCCACAGATATGTGGAGTTTGAGCTCTCTCAATAGCCTCAACCTGTCTTCTAATACGATTTCTGGCATTCTTCATAACGATA TTAGCAATTTTGTTGTCCTGGAAAAGCTTGATCTGTCTGTAAACAGCTTCAGCGGTGAAATCCCTCCAGCTATTGGATCTTTAACTAGCTTGAGAGTTCT CATGCTTCATGGGAATGGTTTTAAAGGGGGGATTCCAGTGGAAATTGTGAAATGCATGTCGTTGATTGTTGTGGATCTCTCGTTGAATAAGCTGAATGGG TCATTACCAGCTGGGTTCGAAGCTGCATTCCCCAAGCTAGAAAGTTTGAGCCTTGCAGGAAACGACATTGATGGAAGAGACTCAGATTTCTCACAGTTGC AGTCTTTGACTTCCCTCAACATTTCAGGGAATTTGTTTCAGGGTTCCGTTTCGGGTCTGTTTTTGAACAAGTTGGAGGTAATTGACCTAAGCAGGAACCA GTTCCAAGGTCACATTTCTCAGGTACAATTCAATTCCAACTTCAGATGGTCTAATTTGGTTCATTTAGACTTGTCAGAGAATCAGTTGAGTGGAGAAATG TTTGGGGATTTTAGTCAAGCTCAGAATCTCAAGTACCTTAATCTTGCATTCAATAGATTTTTTAAGAAGGAATTCCCCAAAATCGATGGGCTTTGGGGTT TAGAGTATCTCAACTTGTCAAAAGCTAGCCTCATTGGTAACATTCCTTCTGAACTTTCAAAGCTCAGCAATCTCCATACTCTTGATCTTTCCGATAATCA TCTTATAGGTGAGATATCTTCTTCATTAACCATGAAAAGTCTCCAAGTTCTTGATGTTTCACATAACAACTTAACTGGCGAAATTCCTTCTCCTGTCCTA CAAAAACTTTCATGGATGGAAAGCTTCAACTTCTCTTACAACAACTTCACCTTCTGTGGTTCTGAAATTTCCCCTGAGAATATCCAAACTTGCTTCATTG GCTCTTTAAACAGCTGCCCAATTGCTGCAAACCCGGGCCGGTTGAGAAGGAAAGCTACCAATAGCAAAGGGCTAAAGCTTGCACTAGCTTTAACCATTTC AATGGTTGCATTGCTGGTGGGTTTGTTGTTTTTAGCCTTTGGTTGCAGAAGGAAATCAAGAATGTGGCCGGTAAAGCAAATGTCATCATACAAAGAAGAA CAGAACATTTCAGGGCCTTTCTCATTCCAAACAGATTCAACCACTTGGGTTGCAGATGTTAAGCAGGCAAATTCAGTTGGAGTAGTTATATTCGAGAAAC CATTGCTGAACATAACATTTGCAGACCTCTTGGCTGTAACTTCGAATTTCGATCGTGGCACCCTTCTGGCTGAAGGAAAGTTTGGTCCTGTTTATAGCGG ATTTCTACCTGGTGCAATCCATGTAGCAGTGAAAGTGCTTGTCCATGGTTCTACATTGACAGAACAAGAAGCTGCTAGAGAGCTAGAGTATCTGGGTCGA ATTAAGCACCCTAATCTTGTGCCCTTAACCGGATATTGTTTGGCTGGTGAACAAAGGATTGCTATCTATGATTACATGGAGAATGGAAACTTGCAGAATC TACTGCATGACTTGCCACTTGGTGTTCAAGCCACTACAGACGATTGGAGCAATGATACATGGGAGAAAGATGATGACAACAATGGTGGAATTCAGAATGT AGGATCTGAAGGTTTACTAACAACATGGGCATTCAGGCACAAGATTGCGCTTGGCACAGCTCGTGCATTGGCATTTCTTCACCATGGATGCTCACCACCT ATCATTCACAGGGATGTTAAAGCTAGCAGTGTCTATCTGGACTACAACCTGGAGCCAAGGCTATCTGATTTCGGACTAGCCAAACTCTTTGGAAATGGTT TGGACGAGGAGATTGCTCGTGGATCGCCTGGCTATTGTCCACCGGAGTTTGCTGATCCGGATTATGACCACACACCAACACCAAAGTCTGATGTTTATTG CTATGGTGTCATTCTTTTTGAGCTCGTCACAGGGAAGAAGCCTACTAATGATGAGTATCCTGAAGAAAAAGATGGTGTACTAGTTAGTTGGGTAAGAGGG TTGGTGAGAAAGAACCAAAGTTCAAGAGCTATTGATCCAAAGATTCGCGGCACTGGAACAGATCGTGACATGGAGGAAGCTCTCAAGATTGGATACCTAT GCACGGCTGATCTTCCATCAAAACGGCCAAGCATGCAGCAGGTAGTTGGACTTCTTAAAGATATTGAACCAAGAAGTTAG
AA sequence Show only first row Show all	>Lus10036608 pacid=23174402 polypeptide=Lus10036608 locus=Lus10036608.g ID=Lus10036608.BGIv1.0 annot-version=v1.0 MGFGFFTFTLVITLFFTISSCQEPNTDEYFVSEFFKKMGLASSSQHYSFSGPFCSWQGVLCDAEKEHVVGLTASGLGLSGPIPDITIGKLSKLQTLDLSN NKITALPTDMWSLSSLNSLNLSSNTISGILHNDISNFVVLEKLDLSVNSFSGEIPPAIGSLTSLRVLMLHGNGFKGGIPVEIVKCMSLIVVDLSLNKLNG SLPAGFEAAFPKLESLSLAGNDIDGRDSDFSQLQSLTSLNISGNLFQGSVSGLFLNKLEVIDLSRNQFQGHISQVQFNSNFRWSNLVHLDLSENQLSGEM FGDFSQAQNLKYLNLAFNRFFKKEFPKIDGLWGLEYLNLSKASLIGNIPSELSKLSNLHTLDLSDNHLIGEISSSLTMKSLQVLDVSHNNLTGEIPSPVL QKLSWMESFNFSYNNFTFCGSEISPENIQTCFIGSLNSCPIAANPGRLRRKATNSKGLKLALALTISMVALLVGLLFLAFGCRRKSRMWPVKQMSSYKEE QNISGPFSFQTDSTTWVADVKQANSVGVVIFEKPLLNITFADLLAVTSNFDRGTLLAEGKFGPVYSGFLPGAIHVAVKVLVHGSTLTEQEAARELEYLGR IKHPNLVPLTGYCLAGEQRIAIYDYMENGNLQNLLHDLPLGVQATTDDWSNDTWEKDDDNNGGIQNVGSEGLLTTWAFRHKIALGTARALAFLHHGCSPP IIHRDVKASSVYLDYNLEPRLSDFGLAKLFGNGLDEEIARGSPGYCPPEFADPDYDHTPTPKSDVYCYGVILFELVTGKKPTNDEYPEEKDGVLVSWVRG LVRKNQSSRAIDPKIRGTGTDRDMEEALKIGYLCTADLPSKRPSMQQVVGLLKDIEPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	0	1
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	1.0	0.8281
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	2.0	0.8032
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	5.3	0.7133
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	11.0	0.7166
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	13.1	0.7755
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	20.2	0.6891
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	23.7	0.7944
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	30.7	0.7526
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	30.8	0.7640
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	31.2	0.7336

Compare expression of checked genes

Lus10036608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.