Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 537 / 2e-177 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 460 / 1e-149 AFH3 formin 3 (.1.2) AT5G67470 366 / 2e-112 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 357 / 2e-107 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 352 / 4e-107 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 350 / 1e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 286 / 4e-84 ATFH8 formin 8 (.1) AT1G59910 271 / 2e-77 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 228 / 5e-63 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 209 / 7e-57 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035827 [exp] 818 / 0 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011168 [exp] 685 / 0 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 682 / 0 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 489 / 9e-160 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10015091 [exp] 489 / 1e-153 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10039705 [exp] 474 / 2e-153 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 441 / 6e-142 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10019298 [exp] 369 / 1e-112 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 367 / 3e-112 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131700 [exp] 614 / 0 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 605 / 0 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 496 / 7e-162 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 374 / 2e-115 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.014G174700 [exp] 368 / 2e-111 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 362 / 2e-110 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 359 / 3e-109 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 355 / 6e-108 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.002G240232 [exp] 353 / 9e-106 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 346 / 2e-104 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10036609 pacid=23174526 polypeptide=Lus10036609 locus=Lus10036609.g ID=Lus10036609.BGIv1.0 annot-version=v1.0 ATGCAGATTCAGCAGTCAATGGTTCAAGTTAAGCTATGTTTTTGGTTACTTGTGGTCTTCCTGCTATGTGTCTCTACTGCCCGGAGCTTCGATCGCGGAG ATGGTGCAGAGGGATTGCTGCTCGGCAGATTGTTTGATCCAGTGACCGAGGAGGTGGATCAGAGCCTGGCATCACTACTATGGGACAGTTGCAAGCTAGA TCTGATTCGTCTGAAAGAAGATGATGAAGATCTCAACTTCCTTATCCCGGAGGAAACATCTGGCCGACCTGCCGAGCTTAATTTGAAGGCCTGGTCATTG TCAAAACAAGAAATGCAGTTTTTTAGAACTACACAACCACGATTGAGACAAACGCTTTTAGATTGTATAAGAAGGAATGATCTTTTATCTACTATCTCTG TTGAAGAACGTGGCTTTTCTATGCAATATCTGAAGCATCTCAACTTCTTACTTGTTAGTTCTGCAGTCCCTGCCAGGAAGTTGCTTGAAAGCATTGCAGA GCCACCAACATCTGCTCCATCTCCCGCACCATCCCCACAGTCAGGATCTTCTACCGGTGGGAAACCAAGTTCAAGGGAAGTTCATGCAGCAACCTCTTCA TCTAGTGAAAGAGAGTCTTCTAAAGCTGCTGGGGAGCCTGGAGGAAATAGTCAAAAGAAGAAAATTATTATTGCAGTGGTTGTTACTGCTGCAATGACAT CCATTTTGGCCGCACTGTTCTTCTTTTTCTGTTCGAAAGTCTTCAGATCGGGACCAGATGCTGGGTTAAATGATGAGAAGCGACTTCTTAGCCTAAGCCT AAGCGACTCTGTTAGCTCTTCACACATGTCTTTTAGTACTTTCAGAGAAGAAAAACTTGGGTCTCAATCTCTAAACTCAAACGGGAAGAATTCGTCTATA GATGGCAGAATCCTCTCTGATAATGTTGCTTTTGCCTCAATGGAGGGTATTCGAGGTGCTACTAAATCCTCGCCTGAATTGGTTGATACCTCCATGACGG GTAACGGTTTGCTTCCACCTCCTCCAGGAAGGACGCCTGGTCTACCTCCATTGAAGCCTCCCCCAGGGAGGACAGTTCGTCTTCCACCCGAACCACCTGC TCCTCATGGGCCTCCTCCTAGTAAGGCTCCACCTTTACCTCCTACACCTCCACCTCCAACTACGAAACCTTCGATCTCCGGATCTACTCTGCCTCCTGGA CCTCCCCGTCCACCTCCTTCTACCACACCTGGCCCTCCACCTCCTGCACCTCCCCCAAGGGCTGGTCCAGGTCCTCCTCGAGCACCTCCGCCAATGGCTT CGAAAGTTCCTAAAGCTTCTGATGCGAGGGTTCCTGAGGGAGGTGATAATAAAGCCAAGTTAAAGCCATTTTTCTGGGACAAAGTTCTCGCAAATCCTGA TCAGTCGATGGTTTGGCATCAGATTAAATCAGGATCTTTTCAGTTCAATGAGGAGATGATAGAGACTCTATTTGGTACAGCACCTCAGAAGAGCAAAGTT GAGGGGGGAAAAAGCTATTCACAGGAACCTTCTTCACAGTTTATTCAAATTTTGGATCCTAGAAAGGCTAAAAACTTATCAATTCTACTCCGTGCTCTGA ATGTTACAACAGAAGAAGTCTCCGATGCTCTGCTTGAAGGAAATGAGCTTCCTGCTGAGCTCCTTCAAACTTTGATGAAGATGGCACCTACTTTGGACGA AGAACTGAAACTTAGGCTATTCAGTGGTGAACTTTCACAACTGGGGCCTGCTGAGCGGTTTCTTAAAGCATTGGTCGATATCCCTTTTGCTTTTCATCGT ATGGAAGCACTGTATTTCATGGGCACTCTAGAGGAGGAGATTGCTAGTGTGACTGAGTCCTTCAGAACTTTAGAGGTTGCTAGTAATGAACTGAGGAGTA GCCGGTTGTTCCTAAAGCTTCTAGAAGCGGTCCTGAAAACTGGAAACCGGATGAATGATGGTACATTCCGAGGTGGTGCACAGGCATTCAAGCTTGACAC TCTTCTCAAATTATCGGACGTGAAGGGGGTAGATGGCAAGACCACACTGTTGCATTTTGTGGTTCAGGAGATAGTCCGGTCCGAAGGAGCGAGGGCTGCC CATGCAAGGAGAGAGAGTAGTAGTTTGTCCAATAATCAGGAGATTTCTCCAGACACAGAAGACTACTACTGTGCACTGGGTCTTGAAGTGGTTTTTCGTT TGAGCAGCGGACTGGAAAATGTGAAGAAAGCAGCTGCTATCGATGCTGACACCCTGATAGGAACTGTTTCTAGACTTGGTCATTCGCAGCTGAAAACTCG AGACTTTTTGAATAAAAAGATGAACGGATCAGAGGATAGTCGGTTTCATGAAGTACTGAAGAGCTTCGTTCAGAGTTCTGAAGGTGAAGTCACGTCGTTG CTCCAGGAAGAAAAGAGAATTACAGCGCTGGTAAAGAGCACCGGCGATTACTTCCATGGGAATTCAGGCAGGGACGAAGGGTTACGCTTGTTTATAGTAG TACGGGACTTCTTAATAATGTTAGAGAAGGTGTGCAAAGAGGTAGAAGCAGCACAGAAGAAGTCGGGCAAAGCGGTTAAGAAAGAGGGTTCTACTGCTTC ATCAAACTCAAACTCCACCATTACGCAAAGCCAACCTCCTCGGTTGGATCCTCGTTCAAAGCTGATTCCTGCAATTGCAGAGAGGAGACCTCATAGTTCA GAGAGTTCAGACGACAGTGAGTAA
AA sequence Show only first row Show all	>Lus10036609 pacid=23174526 polypeptide=Lus10036609 locus=Lus10036609.g ID=Lus10036609.BGIv1.0 annot-version=v1.0 MQIQQSMVQVKLCFWLLVVFLLCVSTARSFDRGDGAEGLLLGRLFDPVTEEVDQSLASLLWDSCKLDLIRLKEDDEDLNFLIPEETSGRPAELNLKAWSL SKQEMQFFRTTQPRLRQTLLDCIRRNDLLSTISVEERGFSMQYLKHLNFLLVSSAVPARKLLESIAEPPTSAPSPAPSPQSGSSTGGKPSSREVHAATSS SSERESSKAAGEPGGNSQKKKIIIAVVVTAAMTSILAALFFFFCSKVFRSGPDAGLNDEKRLLSLSLSDSVSSSHMSFSTFREEKLGSQSLNSNGKNSSI DGRILSDNVAFASMEGIRGATKSSPELVDTSMTGNGLLPPPPGRTPGLPPLKPPPGRTVRLPPEPPAPHGPPPSKAPPLPPTPPPPTTKPSISGSTLPPG PPRPPPSTTPGPPPPAPPPRAGPGPPRAPPPMASKVPKASDARVPEGGDNKAKLKPFFWDKVLANPDQSMVWHQIKSGSFQFNEEMIETLFGTAPQKSKV EGGKSYSQEPSSQFIQILDPRKAKNLSILLRALNVTTEEVSDALLEGNELPAELLQTLMKMAPTLDEELKLRLFSGELSQLGPAERFLKALVDIPFAFHR MEALYFMGTLEEEIASVTESFRTLEVASNELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIVRSEGARAA HARRESSSLSNNQEISPDTEDYYCALGLEVVFRLSSGLENVKKAAAIDADTLIGTVSRLGHSQLKTRDFLNKKMNGSEDSRFHEVLKSFVQSSEGEVTSL LQEEKRITALVKSTGDYFHGNSGRDEGLRLFIVVRDFLIMLEKVCKEVEAAQKKSGKAVKKEGSTASSNSNSTITQSQPPRLDPRSKLIPAIAERRPHSS ESSDDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	0	1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	1.0	0.9335
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	2.4	0.9059
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	6.9	0.9000
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	7.7	0.8850
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	10.8	0.8522
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	12.0	0.8558
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	15.5	0.8742
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	18.4	0.8686
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	20.7	0.8782
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	21.6	0.8757

Compare expression of checked genes

Lus10036609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.