Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 403 / 1e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 367 / 1e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G21310 364 / 1e-123 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 360 / 4e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 360 / 1e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 347 / 9e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 345 / 3e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 343 / 4e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 313 / 2e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 309 / 8e-99 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035828 [exp] 766 / 0 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 362 / 5e-124 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031958 [exp] 365 / 5e-123 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 363 / 1e-121 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 354 / 1e-119 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 354 / 1e-119 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 354 / 2e-119 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 352 / 1e-118 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 349 / 9e-118 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 434 / 4e-151 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 423 / 8e-147 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 380 / 1e-129 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 373 / 3e-127 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 369 / 2e-125 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 368 / 4e-125 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 368 / 5e-125 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 360 / 6e-122 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 352 / 8e-119 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 351 / 1e-118 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10036610 pacid=23174380 polypeptide=Lus10036610 locus=Lus10036610.g ID=Lus10036610.BGIv1.0 annot-version=v1.0 ATGATCAAGAGAAAGAGCGAGCAGCAGTTGCGCGGCCCGCAGGCATTGTTCAAGCTAATCAACGGGCAGAAGCGTTTCCAGAGCTTCGTCATCTATTTTC TCCTCTTCGGCTGCGGATTAGCATTCGGCGTCACCGTATGTCTCTACCTCCGTGACATTTCTTACTACTTGCGCCTCTACCAATTCTCAATGCACCCGCC CACTACTACTCCTAATCCAGAATCACACCTCCTGCTCAATTCGAACCCGTCCATCACCACAGCTTCAACAACAACCGGCACGTCGAAAGACGACGATTCG TCATCTTCGTTTTCGCTGGTGTCCCCGTTGAGGCCTTTCCTGCCGAGTTTCCTAACGCAATCGAGGAAGAGCATGGGAGACGAGGATCTTGATGATCCTG CGGGCAAGGGCAAATATTGCACGGTGTGCCACACGATGAATGACGAAGAGCTTCTTTGGAGGGCTTCCATGGTTCCGAGGATCTCGTCGTTGCCGTTCAG GAGGGTTCCTAAAGTAGCCTTCATGTTCCTTACCAGAGGGCCGTTGCCTCTGGCGCCCATGTGGGAATTGTTTTTCAGAGGCCATGAGGGACTTTATTCT ATTTATGTTCATAACCTTCCCTCTTACAATGAAACCGATCCCGTCGACTCTGTCTTCTACGGCCGTAGAATCCCCAGTCAGGAAGTAGGGTGGGGACAAC CGTCGATGATCGAAGCAGAGCGCCGGCTGATCGCAAATGCACTCCTTGACTTCGCCAACCAGCGTTTCGTTCTGCTGTCGGAAGCATGCATCCCGATCTT CAACTTCACGACCGTCTACAATTACCTGCTCAAGTCAAGCCACTCGTTCGTGGAGGTGTACGATCTTCAAGGTCCGGTGGGCAGAGGAAGGTACAACATG TGGATGAAGCCCCAGATTGAGCTCGAAATGTGGCGCAAAGGATCTCAGTGGTTCGAGATCGACCGCAAGCTGGCGATCGAGATAGTCTCTGACCAGACCT ACTTCCCAGTCTTCCAGCGCTATTGCACAGGTTTGTGCTATAGCGACGAGCACTATCTCCCGACCTTTGTCTACATCAGGTTAGCGCGTCGTAACTCCAA TCGCACGCTGACCTGGACGGATTGGTCGAAAGGAGGGCCCCACCCGAGCAGCTTCGGCGACGTAACCCCACGATTGTTGGAACACATGAGGAACAGTAGT CGTTGTCTTTATAACGGCAGGGAAACCACGGTTTGCTACATGTTTGCGAGAAAGTTCAATGCTAACTCGTTGGGCAACTTGTTGAGAGTTGCCCCACGTG TCATGCACTTTTAG
AA sequence Show only first row Show all	>Lus10036610 pacid=23174380 polypeptide=Lus10036610 locus=Lus10036610.g ID=Lus10036610.BGIv1.0 annot-version=v1.0 MIKRKSEQQLRGPQALFKLINGQKRFQSFVIYFLLFGCGLAFGVTVCLYLRDISYYLRLYQFSMHPPTTTPNPESHLLLNSNPSITTASTTTGTSKDDDS SSSFSLVSPLRPFLPSFLTQSRKSMGDEDLDDPAGKGKYCTVCHTMNDEELLWRASMVPRISSLPFRRVPKVAFMFLTRGPLPLAPMWELFFRGHEGLYS IYVHNLPSYNETDPVDSVFYGRRIPSQEVGWGQPSMIEAERRLIANALLDFANQRFVLLSEACIPIFNFTTVYNYLLKSSHSFVEVYDLQGPVGRGRYNM WMKPQIELEMWRKGSQWFEIDRKLAIEIVSDQTYFPVFQRYCTGLCYSDEHYLPTFVYIRLARRNSNRTLTWTDWSKGGPHPSSFGDVTPRLLEHMRNSS RCLYNGRETTVCYMFARKFNANSLGNLLRVAPRVMHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	1.0	0.9438
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	2.4	0.8738
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	4.0	0.9250
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	6.7	0.8758
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	9.6	0.8915
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	13.0	0.8666
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	13.2	0.7831
AT3G57440			unknown protein		Lus10042062 [exp]	15.8	0.8968
					Lus10028460 [exp]	17.9	0.8133
AT5G41720			unknown protein		Lus10006473 [exp]	20.1	0.8300

Compare expression of checked genes

Lus10036610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.