Plant FIBer expression Database

Lus10036611 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58000 302 / 3e-96 Reticulon family protein (.1)
AT2G20590 147 / 2e-38 Reticulon family protein (.1.2)
AT4G28430 142 / 1e-36 Reticulon family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035829
[exp]
963 / 0 AT5G58000 326 / 1e-105 Reticulon family protein (.1)
Lus10039890
[exp]
112 / 5e-27 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
Lus10002173
[exp]
110 / 1e-26 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G108200
[exp]
417 / 1e-137 AT5G58000 344 / 1e-110 Reticulon family protein (.1)
Potri.006G185700
[exp]
402 / 3e-132 AT5G58000 339 / 7e-109 Reticulon family protein (.1)
Potri.007G137700
[exp]
148 / 1e-38 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2)
Potri.017G014300
[exp]
139 / 2e-35 AT4G28430 283 / 5e-91 Reticulon family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0484 Peroxisome PF02453 Reticulon Reticulon
Representative CDS sequence
>Lus10036611 pacid=23174623 polypeptide=Lus10036611 locus=Lus10036611.g ID=Lus10036611.BGIv1.0 annot-version=v1.0
ATGGAGGCGAATGGAAGGAGAAGAGTGAGAGCAGGGGTCAACACCAGAGCCGGATCAGTATGGGAGAGCAGGATGAAGGTCGACGAATTCAAAGGCGGGA
TCAAGGTCTTCAATGGTGAAGTACAAACCGATCCACAGTCGCCGACTTCACCTTCGCCGATTCCACTTGCTGCCAGTGGCGGGGCCAGGAGGCAGACGCT
GAGGAACTTAACTGCCGGAACTGTGGCGAGCAGCGGGAAGAGGAAGACGTGGAAGTCGGAAAGCTTCGATGGAACAATTCAGATTGCTGGTGTTTCGTCG
GTTGATGGAATTAAGAATAGCCCCCCACCAATTCAGGGGAGGAAAGTCAGATCTGACATGGGAATTGGTAGCGACGGAATTGTGAGGAGTCCTGCTCAGA
TCAGTAAGAAGGGGAGATCTGATTGCGGTGGAGGAATTTCTCCTTCTATTGAGGTTGGAAAGTCGAGATCCGGCGAATCTGACGTTGGGAAAGAATTGGT
TGAATCCGTCTCTGAAATTGAGAAGAAGATCAACTCGTCTGACTCGGCGGATACTACTTTTAAGGAGTTTGGCGTTTGTGAAGAAGAGAAGGTAGTTTCT
GCTACTTTTGATGAAAATCATGGCGATGAAGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAACGGGGAAGACGGAAGAGGAAGCTGAGAAGAAGATTATTG
ATATTACGAATACGAATACGGAAAAGCCAGAAGAGGAAGTAGTAGAACCGACAAATTCTCCAGATCAGGTGAAGCCGAAGAAATTAGTTCATCAGTTTGA
GAACAGAGCTCCACCGCCAGTAGCTTCCACGGTGAGGGAACAACCGCCACCACCGGTGATTAGAAGAGCATCAGTTTACCAAAGCTTTAGAAAACCGAGT
GCTCCAGATCCAGGTCCATCAAGGAATTACAGAGGAGGAAAACAGAGCAAGCTCCAGAATCTGGTGGATTTGGTGATGTGGAGAGACGTATCGAGATCTG
CGTTCGTTTTTGGAATGGGAACATTCGTCATTATCTCGTCTTCCTATACTCAGGATCTCAACATCAGCTTCATTTCAGTGATGTCGTACCTGGGTCTGGT
TTACCTCGCTGCAATATTCCTCTACAGAACTCTTTTGTTCAGAGGGGCTGTGGAGGATGAGGAAGAAGAAGATGAAAAGGGGAGGTATGTGGTTGGTGAA
GGGGAGGCAATTGGGTTGGTGAAGTTACTTCTGCCATACCTCAATGAATGTCTCCTCAAAATCAAAGCCCTCTTCTCTGGCGATCCTTCCACCACTATGA
AGTTGGCAGTGCTGCTGTTCGTTCTTGCCAGGTGTGGCGGCTACATCACCATTTGGAAGATGGCCAAATTGGGATTTTTCGGAGTTTTCGTACTGCCAAA
AGTCTGCTCTTCCTACTCCACCCAGTTAACCTCCTGCGCCAAATTCTGGATTCAACGATTTCACGACGCGTGGGACAAGTGTGCGCACAAAAAGGCTGTG
GCATTGGGCATCTTCACCTTGGTTTGGAACTTGTCGTCAACCGTCGCAAGAGTTTGGGCCGTGTTTATGATGTTTGTGGCCGTCCGGTACTATCAACAGT
GCATTCAAAGAGACGGTGCAAATTGGGCAGACTGTGATGAGGATGAAGATGTTACTACCGCCGCTGATATAGGGGAACACGCACTTGGGCCGAGAAGACG
GCCCAATTCCGTTCAAGTAAACAATAAACTAAAAAAGAATTACTGA
AA sequence
>Lus10036611 pacid=23174623 polypeptide=Lus10036611 locus=Lus10036611.g ID=Lus10036611.BGIv1.0 annot-version=v1.0
MEANGRRRVRAGVNTRAGSVWESRMKVDEFKGGIKVFNGEVQTDPQSPTSPSPIPLAASGGARRQTLRNLTAGTVASSGKRKTWKSESFDGTIQIAGVSS
VDGIKNSPPPIQGRKVRSDMGIGSDGIVRSPAQISKKGRSDCGGGISPSIEVGKSRSGESDVGKELVESVSEIEKKINSSDSADTTFKEFGVCEEEKVVS
ATFDENHGDEEEEEEEEEEETGKTEEEAEKKIIDITNTNTEKPEEEVVEPTNSPDQVKPKKLVHQFENRAPPPVASTVREQPPPPVIRRASVYQSFRKPS
APDPGPSRNYRGGKQSKLQNLVDLVMWRDVSRSAFVFGMGTFVIISSSYTQDLNISFISVMSYLGLVYLAAIFLYRTLLFRGAVEDEEEEDEKGRYVVGE
GEAIGLVKLLLPYLNECLLKIKALFSGDPSTTMKLAVLLFVLARCGGYITIWKMAKLGFFGVFVLPKVCSSYSTQLTSCAKFWIQRFHDAWDKCAHKKAV
ALGIFTLVWNLSSTVARVWAVFMMFVAVRYYQQCIQRDGANWADCDEDEDVTTAADIGEHALGPRRRPNSVQVNNKLKKNY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58000 Reticulon family protein (.1) Lus10036611
[exp]
0 1
AT3G51580 unknown protein Lus10025140
[exp]
3.0 0.8259
AT2G33990 IQD9 IQ-domain 9 (.1) Lus10025425
[exp]
5.7 0.7938
AT4G05150 Octicosapeptide/Phox/Bem1p fam... Lus10002588
[exp]
12.2 0.7589
AT3G01690 alpha/beta-Hydrolases superfam... Lus10000544
[exp]
16.6 0.7446
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10000537
[exp]
19.0 0.7475
AT5G47960 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTE... Lus10014732
[exp]
24.2 0.7328
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Lus10024653
[exp]
27.1 0.7573
AT5G05930 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1... Lus10009875
[exp]
27.5 0.7196
AT4G25230 RIN2 RPM1 interacting protein 2 (.1... Lus10031152
[exp]
28.1 0.7584
AT1G47310 unknown protein Lus10011672
[exp]
32.1 0.7186

Lus10036611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.