Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58160 609 / 0 actin binding (.1) AT2G25050 553 / 6e-175 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 509 / 2e-166 Actin-binding FH2/DRF autoregulatory protein (.1) AT1G31810 498 / 3e-153 AFH14 Formin Homology 14 (.1) AT5G07740 500 / 1e-150 actin binding (.1) AT5G07770 403 / 1e-123 Actin-binding FH2 protein (.1.2) AT5G07650 375 / 1e-112 Actin-binding FH2 protein (.1) AT5G07780 359 / 5e-111 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 362 / 2e-107 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 191 / 5e-54 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035830 [exp] 1212 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10007447 [exp] 563 / 1e-177 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 557 / 5e-175 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 520 / 2e-160 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 514 / 1e-158 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 500 / 5e-154 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 489 / 1e-148 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 280 / 4e-84 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 207 / 9e-61 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108000 [exp] 670 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185601 [exp] 667 / 0 AT5G58160 603 / 0.0 actin binding (.1) Potri.006G185501 [exp] 652 / 0 AT5G58160 598 / 0.0 actin binding (.1) Potri.006G263700 [exp] 602 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 583 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 527 / 9e-163 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 525 / 2e-161 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 523 / 2e-160 AT5G07740 722 / 0.0 actin binding (.1) Potri.007G054900 [exp] 135 / 8e-32 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.002G240232 [exp] 127 / 2e-29 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10036612 pacid=23174500 polypeptide=Lus10036612 locus=Lus10036612.g ID=Lus10036612.BGIv1.0 annot-version=v1.0 ATGGCATTGTTTCGCAAACTTTTCTATAGGAAGCCTCCTGATGGCCTGCTTGAGATCTGCGAGCGCGTCTATGTTTTCGACTGCTGTTTTACTATGGATT CATGGCAAGAGAAAGATTACAAAGGATATATAGGTGGAATTGTGGGTCAGCTGAAAGAACACTTCCCTGATGCTTCATATCTAGCATTCAATTTCCGTGA AGGAGAGACACAAAGTCCGTTTGCTGATTTTTTGTCGGATTACGACATGACGATCATGGAGTATCCTCGGCACTATGAAGGTTGCCCTTTGCTCACAATG GAGGTCGTCCATCATTTTCTAAGATCAGGTGAAAGTTGGCTTTCACTTGGGCAACAAAATTTGTTGCTGATGCATTGTGAAAGGGGCGGTTGGCCAGTTC TTGCCTTTATGCTGGCTGCATTGCTGATATACAGGAAGCAATACACAGGAGAACAGAAGACATTGGATATGATCTATAGACAGGCGCATTGTGACCTCTT GCAGTTGTGTCCTCTAAACCCGATTCCTTCTCAGCTGCGGTATCTGCACTATGTTTCAAGAAGAAACGTGGCTACAGAGTGGCCTCCACTTGACAGAGCT CTCAACTTGGACTGTATCATTATGAGATGCATTCCGAATTTTGATGGTGAGGGTGGGTGCCGTCCTGTATTTCGTATATATGGGCAGGATCCTTTTCTTG CTACAGATAGAACACCAAAGTTCTTGTACTCCACTCCGAAGAAAAACAAAACCTTCAGGGCTTATAAGCAGACAGAATGTGAATTAGTAAAAATCGATAT CCGTTGTGCCATCCAAGGTGATGTTGTGCTTGAATGTGTCAGCATACGGGATGAAATGGAATCTGAGGAAATGATGTTTCGGGTAGTGTTCAATACAGCT TTCATCAGGTCAAACATCTTGATACTCAATCGAGATGAAATTGACATATTATGGGATGCTAAAGTTCTATTCCCAAAGGAATTCAGAGCAGAGATTATTT TCTCGGAGGTTGATGCCCATGCTACGGTCATTCCGATGGATTTTTCCATCCTGGAGGAGAAAGATGGCCTGCCGATTGAAGCTTTCGCTAAAGTTCATGA AATCTTCAGCAACGTGGACTGGTCAGCTCCGGATGCAGATGCAGCTTTAAATATGCTTCAGCAAATGCAGGACATGGAGTTGGGACACAGTGCAGAACTA AGTCCTCAAAGTCCAGAAGCTAGTCTAGGATCCCATAGTGACAGAAACAAGAGAATGGTTTCAGAAAGGTTATTAAGGAACTCATTTCTCTCGTGGGAAA ATACTGAAAGTCTATACTCACCAGAAATATCTCCACGTTTTAGATTTCTCCGGGATGAGCAGCAAAGTCTTGAAAATAGTCCTAAAGTTGAATCTGATAG CATCAGCCAAGAGACGCTCCAAACACCTGTGGATCTCACCATTAAAGACTTGTTACGAGACCACACATCACTCCAGAGGATCCTAAAGAACTCACTGGCA CAAAGTCTTGGGCACCTGGACTCACCAAATTCATTAACGCGTACTGAGTTGGTTGGTTCTGAGTACCAAGACTCTGAAAGAAACATTAAAGTTCCAAGTC AATCTAATGCTGACACCAAAAATACTTGTGATACATCAACACCTCAACTACAACCTGCTATGGCTTCTGCTGCTGAGAAGCTACTCTTATGTGCACAGTT TTCAGCACCCAACGGTGCTGCCCCCAAGACTCTTTCAACTCCACAGAACGGGATTTCCTCAAAAATCGATATCCGCTGTGCCATCCAAGGTGATGTTGTG CTTGAATGTGTCAGCATACGGGATGAAATGGAATCTGAGGAAATGATGTTTCGGGTAGTGTTCAATACAGCTTTCATCAGGTCAAACATCTTGATACTCA ATCGAGATGAAATTGACATATTATGGGATGCTAAAGATCTATTCCCAAAGGAATTCAGAGCAGAGATTATTTTCTCGGAGGTTGATGCCCATGCTCCGGT CATTCTGATGGATTTTGCCAGCCTGGAGGAGAAAGATGGCCTGCCGATTGAAGCTTTCGCTAAAGTTCATGAAATCTTCAGCAACGTGGACTGGTCAGCT CCAGACGCAGATGCAGCTTTAAATATGCTCCAGCAAATGCAGGACATGGAGTTGGGACACAGTGCAGAACTAAGTCCTCAAAGTCCAGAAGCTAGTCTAG GATCCCATAGTGACAGAAACAAGAGAATGGTTTCAGAAAGGTTATTAAGGAACTCATTTCTCTCGTGGGAAAATACTGAAAGTCTATACTCACCAGAAAT ATCTCCACGTTTTAGATTTCTCCGGGATGAACAGAAAAGTCTTGAAAATAGCCCTAAAGATGAATCTAGCATCGGCCACGAGACGCTCCAAACACCTATG GATCTCACTATTAAAGACTTGTCACGTGACCGCACATCACTCCAGAGGATCCTGAAGAACTCACTGGCACAAACTCTTGGGCACCTGGACTCACCAAATT CATTAACGCGTACTGAGTTGGTTGGTTCTGAGTACCAAGACTCTGAACGAAACATTGAAGTTCCCAGTCAATCTAATGCTGACACCAAAAATACTCGTGA TACATCAACACCTCAACTACAGCCTGCTATGGCTTCTGCTGCTGAGAAGCTACTCTTATCTGCACAGTTTTCAGCACCCAACAGTGCTGCCGCCAAGACT CTTTCAACTCCACAGTTCACTTTTTCTCCTCCCCCACCACCAACACCTCCATTGACTTCGAAAGAACGTGGTGCTGTTAGAGTCAAACCTCCTCCTCCTC CACCACCTCCACCTCCTGGATTTCTTCCAGGGAGTGCCACAACCTCTCCGCCTCCACCTCCTCCTATTGGTTCATCGCATTCTCATCCTTCAATTCTTGC ACCTCCTCCTCCTCCGATTCCTTCTCGACACATTCCTACCTCTGTTCCATCTCCCCCGCCACCGCCTCCTGCTCCTCATTCATCTGCACCTTCTGCTCCT CCTCCACCACCTCCTCCTCTGGTTTCTTCAGCGCCTCCTCCTTCTACCCCTGCTCCACCTCCTCCGCCTCCTTCTGGTAATGGACCTCCTTCCACTGTAC CACCATCTCCTGCTCCACCAATGAGTTCTGCCCTGGGGAGCAAGGGACGGTTGTCTCGTACTATAAAGAGCAATCAGAAAAAATTGAAACCATTGCATTG GTTAAAGTTGACAAGAGCTGTACAAGGAAGCTTGTGGGCTGAGACGCAAAAATCAGGAGAAGCCTCCAAGGCTCCAGAGATCGATATGTCAGAGCTTGAG AGTCTTTTTGCTGCAGCAGCACCAAATCGTGGAGGAAAATCCAATGCATCAGGTCCACGTGCACCTAAGTCCGAAATAGTTCAGCTGATTGACCACAGAA GAGCGTACAACTGTGAAATCATGCTTTCGAAGGTGAAGATTCCACTGAATGAGTTAACAGGTTATGTCCTTGCTCTGGAAGATTCAACTTTAGATATAGA TCAAGTAGAAAATCTGATCAAGTTTTGTCCAACAAAAGAAGAGATGGAACTCCTTAAGGGCTATACTGGAGATGAGGAAAAGTTGGGGAAATGTGAACAT TTCTTCTTAGAGTTGATGAAAGTTCCAAGAATAGAAGCAAAGCTCAGAGTTTTTGCCTTTAAAATGCAGTTTCGTTCGCAGGTCTCTGATCTCAGAAATA GCCTACAAACGGTCAACTCTGCTGCAGAACAGGCAAGTTACTCTATTGGTCTCTTGGCAATCAGGAATTCTGGAAAGTTGAAGAGAATTATGCAGACTAT TCTCTCTCTAGGAAATGCTTTGAACCAAGGAACTGCAAGGGGTGCTGCAATTGGGTTTAGGTTGGATAGCCTCTTAAAACTAACCGATACGCGGGCGAAG AATAATAAAATGACCCTCATGCACTATCTTTGCAAGGTGCTTGCTGACAAACTACCGGAGCTTCTAGATTTTTCGAAAGATTTGACCAGTTTGGAACCTG CATCCAGGGTGCAATTGAAGTTCTTGGCTGAGGAAATGCAGGCGATAAGCAAAGGATTAGAGAAGGTCATGCAAGAGCTATCCTCGTCGGAGAATGATGG TGGCATTTCAGAACACTTCTGCAAGACACTTAAGGAGTTCCTTCGAGTTGCTGAAGCCGAAGTGAGGTCTCTGGCGTCTTTGTATTCGGGAGTGGGTAGA AATGTAGATGCATTGATTCTTTACTTTGGCGAAGATCCAGCCCGTTGCCCTTTTGAACAAGTTTGTTCGACGCTGCTAAACTTTGTGAGATTATTCAACA AAGCTCACGACGAGAACTGCAAGCAGCTCGAAATTGTGCTCAAGAAAGCAGCTGAGAATGAAAAGAACAACAAAGTAGATACGTCCTTGATGCAAACTCC GGTTCAAACCAGTAGTGTCAAGTGA
AA sequence Show only first row Show all	>Lus10036612 pacid=23174500 polypeptide=Lus10036612 locus=Lus10036612.g ID=Lus10036612.BGIv1.0 annot-version=v1.0 MALFRKLFYRKPPDGLLEICERVYVFDCCFTMDSWQEKDYKGYIGGIVGQLKEHFPDASYLAFNFREGETQSPFADFLSDYDMTIMEYPRHYEGCPLLTM EVVHHFLRSGESWLSLGQQNLLLMHCERGGWPVLAFMLAALLIYRKQYTGEQKTLDMIYRQAHCDLLQLCPLNPIPSQLRYLHYVSRRNVATEWPPLDRA LNLDCIIMRCIPNFDGEGGCRPVFRIYGQDPFLATDRTPKFLYSTPKKNKTFRAYKQTECELVKIDIRCAIQGDVVLECVSIRDEMESEEMMFRVVFNTA FIRSNILILNRDEIDILWDAKVLFPKEFRAEIIFSEVDAHATVIPMDFSILEEKDGLPIEAFAKVHEIFSNVDWSAPDADAALNMLQQMQDMELGHSAEL SPQSPEASLGSHSDRNKRMVSERLLRNSFLSWENTESLYSPEISPRFRFLRDEQQSLENSPKVESDSISQETLQTPVDLTIKDLLRDHTSLQRILKNSLA QSLGHLDSPNSLTRTELVGSEYQDSERNIKVPSQSNADTKNTCDTSTPQLQPAMASAAEKLLLCAQFSAPNGAAPKTLSTPQNGISSKIDIRCAIQGDVV LECVSIRDEMESEEMMFRVVFNTAFIRSNILILNRDEIDILWDAKDLFPKEFRAEIIFSEVDAHAPVILMDFASLEEKDGLPIEAFAKVHEIFSNVDWSA PDADAALNMLQQMQDMELGHSAELSPQSPEASLGSHSDRNKRMVSERLLRNSFLSWENTESLYSPEISPRFRFLRDEQKSLENSPKDESSIGHETLQTPM DLTIKDLSRDRTSLQRILKNSLAQTLGHLDSPNSLTRTELVGSEYQDSERNIEVPSQSNADTKNTRDTSTPQLQPAMASAAEKLLLSAQFSAPNSAAAKT LSTPQFTFSPPPPPTPPLTSKERGAVRVKPPPPPPPPPPGFLPGSATTSPPPPPPIGSSHSHPSILAPPPPPIPSRHIPTSVPSPPPPPPAPHSSAPSAP PPPPPPLVSSAPPPSTPAPPPPPPSGNGPPSTVPPSPAPPMSSALGSKGRLSRTIKSNQKKLKPLHWLKLTRAVQGSLWAETQKSGEASKAPEIDMSELE SLFAAAAPNRGGKSNASGPRAPKSEIVQLIDHRRAYNCEIMLSKVKIPLNELTGYVLALEDSTLDIDQVENLIKFCPTKEEMELLKGYTGDEEKLGKCEH FFLELMKVPRIEAKLRVFAFKMQFRSQVSDLRNSLQTVNSAAEQASYSIGLLAIRNSGKLKRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRAK NNKMTLMHYLCKVLADKLPELLDFSKDLTSLEPASRVQLKFLAEEMQAISKGLEKVMQELSSSENDGGISEHFCKTLKEFLRVAEAEVRSLASLYSGVGR NVDALILYFGEDPARCPFEQVCSTLLNFVRLFNKAHDENCKQLEIVLKKAAENEKNNKVDTSLMQTPVQTSSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58160			actin binding (.1)		Lus10036612 [exp]	0	1
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	2.4	0.9054
AT5G58160			actin binding (.1)		Lus10035830 [exp]	6.9	0.9133
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	8.9	0.9073
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10004691 [exp]	14.7	0.9005
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	15.0	0.8922
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	16.7	0.9163
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	24.6	0.9107
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	35.9	0.9061
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	46.7	0.8978
AT5G07950			unknown protein		Lus10021622 [exp]	49.0	0.8743

Compare expression of checked genes

Lus10036612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.