Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30950 670 / 0 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) AT3G11170 103 / 9e-24 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT2G29980 100 / 4e-23 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G12120 99 / 1e-22 FAD2 fatty acid desaturase 2 (.1.2) AT5G05580 99 / 4e-22 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035831 [exp] 902 / 0 AT4G30950 672 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Lus10005039 [exp] 110 / 2e-26 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10027809 [exp] 107 / 5e-25 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10038321 [exp] 100 / 9e-23 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 98 / 3e-22 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10018245 [exp] 97 / 1e-21 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10004175 [exp] 96 / 2e-21 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 95 / 4e-21 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10040660 [exp] 95 / 5e-21 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185400 [exp] 730 / 0 AT4G30950 690 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Potri.018G107700 [exp] 585 / 0 AT4G30950 555 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Potri.006G101500 [exp] 119 / 3e-29 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 111 / 2e-26 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 108 / 2e-25 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 107 / 2e-25 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 103 / 3e-24 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G192000 [exp] 97 / 8e-22 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 90 / 2e-19 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 89 / 3e-19 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10036613 pacid=23174431 polypeptide=Lus10036613 locus=Lus10036613.g ID=Lus10036613.BGIv1.0 annot-version=v1.0 ATGGCTTGTAGGATTTCTGCTGACTCCGTCTTTCTCCTCTTGGGAGCTAATAAGCGGCCAATCAGGAGCCAGAAGTTTGCAGCTCATTCTTCTACCAGCT TCAATGGTTTCACATGGAACCCACTTGTCTTTGCGGAATCTAAACAGAATAAGCGTTTAGTTCATCTGAGGAGGGCTAGAACTGTACAAGCTGTGGCTAT TCCGATTGTATCACCAGCTGACGGTTCAGAGTACAGGAAACAGCTGGCAGAGAGCTATGGCTTCAAGCAAATTGGAGAAGACCTTCCAGAAGATGTTACA CTAAAGCAAGTCATTGATACCCTCCCAAAAGAGGTGTTTGAGATCGATGATGCGAAAGCATGGAAATCAGTTTTGATTTCAGCAACTTCATATGCATTGG GCCTCTGGATGATTTCCAAGGCTCCTTGGTACCTACTTCCCCTTGCTTGGGCATGGACAGGGACTGCAGTTACTGGGTTCTTTGTCATAGGTCATGATTG CGCTCACAAGTCATTTGCAAGGAACAAAATGGTGGAAGACATTGTGGGAACTCTTGCCTTTCTACCATTAATATATCCATACGAGCCATGGAGGTTCAAG CATGACAGGCATCATGCAAAGACAAACATGCTGGTAGAAGATACAGCTTGGCTTCCTGTTGATAAAGAGGAGTTCAATTCGTCCCCTATCCTGCGCAAGG CAATCGCATATGGATATGGCCCGTTTCGTCCTTGGATGTCTATAGGTCATTGGTTGCTCTTGCACTTCGATCTGAACAGGTTCCGACCAAATGAAATCCA GAGGGTAAAGATAAGTATAGCATGTGTGTTTGGATTCATGGCAATTGGATGGCCCTTGATTATATACAAAGCTGGGATTGCCGGATGGGTCAAGTACTGG TTAATGCCATGGTTGGGATATCACTTCTGGATGAGCACTTTCACAATGGTGCACCATACCGCTCCTCATATTCCATTCAAAAATTCCGAAGAATGGAATG CAGCTCAGGCTCAATTGAACGGAACTGTTCATTGTGATTATCCTCATTGGATCGAGATTCTCTGTCATAACATCAACGTTCACATCCCTCATCACGTTTC GTCACGGATTCCAAGCTATAACCTCCCTGCAGCTCATAAATCTCTGCAACAGAACTGGGGCAAGTACTTGAACGAAGCTACATGGAACTGGCGGCTAATG AAGACCATAATGACAGTGTGCCATGTCTACGACAAGGAGCAAAACTATGTCGCATTTGACCAGCTCGCCCCTGAAGACTCTCTGCCTATATCATTCCTCA AAAGAGTGATGCCTGATTCTGCCTAA
AA sequence Show only first row Show all	>Lus10036613 pacid=23174431 polypeptide=Lus10036613 locus=Lus10036613.g ID=Lus10036613.BGIv1.0 annot-version=v1.0 MACRISADSVFLLLGANKRPIRSQKFAAHSSTSFNGFTWNPLVFAESKQNKRLVHLRRARTVQAVAIPIVSPADGSEYRKQLAESYGFKQIGEDLPEDVT LKQVIDTLPKEVFEIDDAKAWKSVLISATSYALGLWMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFARNKMVEDIVGTLAFLPLIYPYEPWRFK HDRHHAKTNMLVEDTAWLPVDKEEFNSSPILRKAIAYGYGPFRPWMSIGHWLLLHFDLNRFRPNEIQRVKISIACVFGFMAIGWPLIIYKAGIAGWVKYW LMPWLGYHFWMSTFTMVHHTAPHIPFKNSEEWNAAQAQLNGTVHCDYPHWIEILCHNINVHIPHHVSSRIPSYNLPAAHKSLQQNWGKYLNEATWNWRLM KTIMTVCHVYDKEQNYVAFDQLAPEDSLPISFLKRVMPDSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	0	1
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	3.0	0.9220
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	3.2	0.8894
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	4.0	0.8808
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	4.2	0.8845
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	4.2	0.8690
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10012905 [exp]	6.0	0.8928
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	9.2	0.8530
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	9.2	0.9071
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	11.2	0.9026
AT2G38680			5'-nucleotidases;magnesium ion...		Lus10008973 [exp]	11.3	0.8363

Compare expression of checked genes

Lus10036613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.