Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23070 176 / 1e-52 Protein of unknown function (DUF300) (.1) AT1G77220 122 / 2e-31 Protein of unknown function (DUF300) (.1) AT4G38360 118 / 2e-30 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT5G26740 47 / 6e-06 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 44 / 6e-05 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035832 [exp] 327 / 4e-112 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 147 / 5e-41 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10018920 [exp] 145 / 9e-41 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 115 / 7e-30 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10022625 [exp] 106 / 6e-28 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10022626 [exp] 49 / 8e-07 AT4G38360 319 / 2e-108 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10001058 [exp] 42 / 0.0004 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 42 / 0.0004 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062600 [exp] 191 / 2e-58 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 122 / 2e-31 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 121 / 3e-31 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.009G165600 [exp] 116 / 2e-29 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.004G204600 [exp] 115 / 4e-29 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.005G000600 [exp] 42 / 0.0002 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10036614 pacid=23174582 polypeptide=Lus10036614 locus=Lus10036614.g ID=Lus10036614.BGIv1.0 annot-version=v1.0 ATGGATTTGGCTGTTCTCTTCATGGTTCCAGTCTACGCCACCGAGTCCTTGTTGTATTTATGGAACCGCAAGTTGTCGCTTGCCTGTGATATTCTAAGGA ATTGCTACGAGGCTTTCGCATTGTACTCTTTTAGCAGCTATTTAGTCGCATGTCTAGGTGGACAAGGCAGAGTGTTGGAGATTCTCGAAAGCGATTCGAG AAGACAGCTGGTGAAGCCATTGCTAAAGAAAGATGATGAGGAGAAGCAAGATCAAGATCAACATCATCATCATGTAGCAGCATTACGTCGGAGGAGGTCT TCGACGCTCAACTTCTTCTTCCATCCATGTGTTATCGGCAGTGATTTGTTCGACATCGAAAGATTTGGCCTTGTCCAATGTATGATTCTGAAGACGCTGT GTGCATTCTTGGCTTTCGTGTTAGAGATTTTCGGTGTGTATGGTGATGGAACATTCAAGTGGTACTACGGGTACCCTGACATAACAGTGATGGCAATAGC GGCGATTACGCATGCGTATGTATTTCCAGTGGAGCCTTACCATTACATTCCTCCTGCTGATGATCACCACCATTCAACAACCATTGAGAGTAAAGGAAAC TCGGGTGAAGCAGCCGGAACAAGTGTTACCGAAAGTGTGCAAGACATAGTTGTTCCTGGTGGCCAACATGTGGTGAAGGATGTGGTGTTGACAATCAATC AGGCAATGGGACCTGTAGAGAAAGGAGTCACAAAGATCCACCAAACATTTCACCGACGATCAACCAGTTCTGGAGTTGAAGAAGGTGAATCAGAAATTCT ACTAGAAAACAGAACACCCACAGCTCTTAAGTAA
AA sequence Show only first row Show all	>Lus10036614 pacid=23174582 polypeptide=Lus10036614 locus=Lus10036614.g ID=Lus10036614.BGIv1.0 annot-version=v1.0 MDLAVLFMVPVYATESLLYLWNRKLSLACDILRNCYEAFALYSFSSYLVACLGGQGRVLEILESDSRRQLVKPLLKKDDEEKQDQDQHHHHVAALRRRRS STLNFFFHPCVIGSDLFDIERFGLVQCMILKTLCAFLAFVLEIFGVYGDGTFKWYYGYPDITVMAIAAITHAYVFPVEPYHYIPPADDHHHSTTIESKGN SGEAAGTSVTESVQDIVVPGGQHVVKDVVLTINQAMGPVEKGVTKIHQTFHRRSTSSGVEEGESEILLENRTPTALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	0	1
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	2.0	0.9745
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	3.5	0.9603
					Lus10010481 [exp]	3.7	0.9694
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	3.9	0.9638
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	5.2	0.9460
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	6.5	0.9481
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	6.7	0.9510
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	8.5	0.9201
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	10.7	0.9505
AT5G20960		AT-AO1, AOalpha...	ARABIDOPSIS THALIANA ALDEHYDE ...		Lus10011279 [exp]	11.0	0.9138

Compare expression of checked genes

Lus10036614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.