Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58020 354 / 3e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035833 [exp] 648 / 0 AT5G58020 372 / 3e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186900 [exp] 423 / 6e-148 AT5G58020 259 / 5e-84 unknown protein Potri.018G109800 [exp] 423 / 7e-148 AT5G58020 314 / 2e-105 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04641 [flax] [poplar] Rtf2 Rtf2 RING-finger
Representative CDS sequence Show only first row Show all	>Lus10036615 pacid=23174462 polypeptide=Lus10036615 locus=Lus10036615.g ID=Lus10036615.BGIv1.0 annot-version=v1.0 ATGCACACCAAATCCCACCAGGTGTTCCTCAGAACTCCGAATTCCCACCTCCTCCGAACACTGACCTTCGATCCTTCACAAACCCTAACCCTCCGCGACC TCAAGCTCTCCCTGGTCTCCGATCATGGAAACCCTAATTCCTTCTACTTCACCCTCGACGGAAAGCTCCTCCACGACGGTATGGCACTTTTCCCCCATAT CCCCTCCCTCTCTACCCTCGTCTTGCGCCACCGCCTCCTCGGAGGTGGAGGCGACGGAGGTGCCACGGGAGCCGAGTCCCGCGACTGCTACCTGAAGATG TACGCGGAGAAGAAGCCAGATAAAGTCGATCCCAACGAGCAGCGGCTGTCGAAGTGGGTGAATTGCGCGCTCTCGTACGAGACGTTGCGGCAGCCATGCG TGATCGATCGATTGGGGAATGTTTTCAACAAGGAAGCTCTGGTTGAGGCTTTGATTGGTAAGAAGTTACCTAAAGCGTTTGGGCATATTAAGGGGTTGAA GGATATGATTGATATTAAGTTGGAGCCTGTTTTGGGCGGGGTTGAAACCAACAATGCGTGGTTCCAGTGCCCAATTACGGGTCTAGAGTTTAACGGGACT TATAAGTTCTTGGCTTTGAGGAAATGCGGGCATGTGTTGAGTGCCAAGGCGCTGAAGGAGGTGAAATCGTCGGCTTGTTTGGTTTGTTATATGGAATTTG AGGAATGTGATAAGATTGTGATCAATGGGAGTGAAGAGGAGGTGGAGGTTTTGAGGGCAAGGATGGAGGAGGAGAGGGCTAAAGTTAGGGATAAGAAGCA GAAGAAGGTGAAGAATGGAGATGTTGTTGTGGGCAATGGTGTCAATAATGGCAAAGATGGGGTCGAAGTTGAAGTGAAGGAGAAGGAGAAGTCAACAAAG TTGATCGGGAATAAGCATGGCATCATTGATGCTAAGGATGTACAAAAGGCTAATGCGAAAGGGGAGAAGATGAATGGGAAGATTGAGAGTAATAAGAGGT TTAAGGCTGTGGATATTGCACCAGCTCATGCCACCAAGGAGGTTTACGCTTCTCTGTTTACTTCTTCGCAGAAGAAAAAGGATTTCAGGGAAACTTACTC TTGTCGATCTCTCCCACTTGGTAGGAACTGA
AA sequence Show only first row Show all	>Lus10036615 pacid=23174462 polypeptide=Lus10036615 locus=Lus10036615.g ID=Lus10036615.BGIv1.0 annot-version=v1.0 MHTKSHQVFLRTPNSHLLRTLTFDPSQTLTLRDLKLSLVSDHGNPNSFYFTLDGKLLHDGMALFPHIPSLSTLVLRHRLLGGGGDGGATGAESRDCYLKM YAEKKPDKVDPNEQRLSKWVNCALSYETLRQPCVIDRLGNVFNKEALVEALIGKKLPKAFGHIKGLKDMIDIKLEPVLGGVETNNAWFQCPITGLEFNGT YKFLALRKCGHVLSAKALKEVKSSACLVCYMEFEECDKIVINGSEEEVEVLRARMEEERAKVRDKKQKKVKNGDVVVGNGVNNGKDGVEVEVKEKEKSTK LIGNKHGIIDAKDVQKANAKGEKMNGKIESNKRFKAVDIAPAHATKEVYASLFTSSQKKKDFRETYSCRSLPLGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58020			unknown protein		Lus10036615 [exp]	0	1
AT5G58020			unknown protein		Lus10035833 [exp]	1.0	0.9288
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	3.5	0.8616
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	3.9	0.8413
					Lus10006349 [exp]	6.0	0.8402
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	8.9	0.8420
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	9.4	0.8288
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	10.5	0.8552
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	14.9	0.7892
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	19.4	0.8114
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	19.6	0.8197

Compare expression of checked genes

Lus10036615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.