Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 479 / 1e-158 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28415 475 / 2e-157 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 473 / 1e-156 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 460 / 2e-151 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 456 / 5e-150 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT2G36910 402 / 4e-129 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 393 / 6e-126 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28860 387 / 9e-124 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 385 / 4e-123 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G02520 384 / 3e-122 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035834 [exp] 833 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 631 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039533 [exp] 565 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 565 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 488 / 7e-162 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 487 / 1e-161 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 483 / 5e-160 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10014427 [exp] 400 / 6e-129 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10023929 [exp] 401 / 2e-128 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417600 [exp] 664 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 652 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 496 / 3e-165 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 486 / 7e-163 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 485 / 3e-161 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 481 / 2e-159 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 468 / 2e-154 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 438 / 5e-143 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 415 / 2e-134 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 406 / 5e-131 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10036616 pacid=23174360 polypeptide=Lus10036616 locus=Lus10036616.g ID=Lus10036616.BGIv1.0 annot-version=v1.0 ATGAAGAGCCTGGGTGAGAAATCTCAAAAGGCACAGAAGGAAGGAAGCCAGCTAGCAAGTGAAGCGGTGATTAACCACAGGACTATAACTGCATTCTCTT CTCAGAAGAGGATAGTGGGGCTGTTCAAAGCTACACTCAGAGGCCCTAAAAGGGAGAGTGCGAAGCAGTCATGGCTCTCAGGTTTCGGGCTTTTCAGCGC GCAGTTCTTCAACACTGCGTCTACTGCGTTGGCGTTTTGGTATGGTGGGAGGTTAATGATCGAGGGATCCATAACTCCGGAACGGTTGTTCCAAGCATTC CTGATCCTGCTTTTCTCGGCTTACATCATCGCAGAAGCTGGAAGCATGACGAATGATCTTTCAAGAGGCGGGAGTGCTGTTCAGTCAGTGCTTGCAATCC TGGACAGGAAGACTGAAATCGATCCTGACAGCCAATATGGATCGTCAGAGAAGAACAGAAGGGAAATAAGAGGCAAAGTTGAGATGCAAGAAGTCTACTT TGGGTACCCAAGCAGGCCGGATCAGATGATATTTAAAGGACTAAACCTGAAGATGGATGCAGGGAAGACGGTCGCATTGGTAGGGCCAAGTGGGTCGGGG AAATCGACAGTCCTTTCATTGATAGAGAGGTTCTACGATCCGTCGAAAGGAGCAGTGTTTATCGACGGACAAGATGTGAGGAACTACAACCTGAGATGGC TGAGAAGTCACATTGCTTTGGTGAGTCAAGAGCCGACTTTGTTTGCTGGAACCATAGCTGAGAACATAGGATACGGTAATGAGAATGCTAGAGAATCGGA GATCAAAAAGGCCGCACAGCTAGCAAATGCGCATGAATTCATCAGCGGGATGAAAGAAGGGTACGACACATACTGTGGGGAGAGAGGGGTGCAGCTTTCG GGAGGGCAGAAACAGAGGGTAGCGATTGCGAGGGCGATACTGAAGAACCCGGCAATTCTTCTGTTGGACGAAGCGACGAGCGCACTCGACAGTGTGTCGG AGAAATTGGTACAGGAAGCACTGGAGAAGATGATGGTTGGAAGGACAAGCGTCGTGGTTGCTCACAGGCTATCCACTGTTCAGAAATCAGATTCGATAGC TGTGATTAAGAATGGACAGGTTGCGGAGAAAGGGTCGCATAATGAACTCATCGCTTTGGGTAAGAGAGGTGTTTATTACTCTCTCATCAAACCACAAGCT GGAACTGGAACCAGCACCTCTCCTTTCCGCTGA
AA sequence Show only first row Show all	>Lus10036616 pacid=23174360 polypeptide=Lus10036616 locus=Lus10036616.g ID=Lus10036616.BGIv1.0 annot-version=v1.0 MKSLGEKSQKAQKEGSQLASEAVINHRTITAFSSQKRIVGLFKATLRGPKRESAKQSWLSGFGLFSAQFFNTASTALAFWYGGRLMIEGSITPERLFQAF LILLFSAYIIAEAGSMTNDLSRGGSAVQSVLAILDRKTEIDPDSQYGSSEKNRREIRGKVEMQEVYFGYPSRPDQMIFKGLNLKMDAGKTVALVGPSGSG KSTVLSLIERFYDPSKGAVFIDGQDVRNYNLRWLRSHIALVSQEPTLFAGTIAENIGYGNENARESEIKKAAQLANAHEFISGMKEGYDTYCGERGVQLS GGQKQRVAIARAILKNPAILLLDEATSALDSVSEKLVQEALEKMMVGRTSVVVAHRLSTVQKSDSIAVIKNGQVAEKGSHNELIALGKRGVYYSLIKPQA GTGTSTSPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036616 [exp]	0	1
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	11.9	0.6311
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10042319 [exp]	20.0	0.6161
					Lus10035468 [exp]	25.7	0.5774
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	26.5	0.6158
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	30.2	0.6083
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	32.0	0.5709
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	47.9	0.5840
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001292 [exp]	129.7	0.5155
AT2G03630			unknown protein		Lus10037082 [exp]	136.4	0.4312
					Lus10024839 [exp]	136.7	0.5286

Compare expression of checked genes

Lus10036616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.