Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28380 576 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28390 571 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28345 565 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28360 554 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 552 / 3e-180 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 471 / 3e-149 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT5G46540 448 / 1e-140 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G10680 442 / 1e-138 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 443 / 2e-138 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 441 / 9e-138 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035834 [exp] 1174 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 839 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10024162 [exp] 715 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 713 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 574 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 572 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 568 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 493 / 2e-157 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10030674 [exp] 471 / 4e-149 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417600 [exp] 904 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 894 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 594 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 587 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 586 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 566 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 564 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 541 / 5e-176 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 475 / 8e-151 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.018G141300 [exp] 460 / 1e-146 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10036617 pacid=23174677 polypeptide=Lus10036617 locus=Lus10036617.g ID=Lus10036617.BGIv1.0 annot-version=v1.0 ATGGGAGAGAAAGGAGGAGGAATGTTCAGATTTGCAGATGGGACAGACAAGCTTCTGATGTTTCTGGGGACATTGGGTTGCATTGGAGATGGGATGCAGT ATGCTCTTACCATGTTTGTTCTTAGCACTGTCATAAATGAGTATGGCGACCCCAACGCCACTCTTTCCTATGCTACTGTCAACAAGTATTCTCTCCGGTT GCTCTACGTATCGATTTTCGTTGGAGCTGCTGCTTTTGTTGAAGGAATGTGCTGGACAAGGAGCGCGGAAAGACAGACATCTAGGATGAGAACACGATAT CTGAAAGCCGTCCTAAGACAAGACGTGGGTTTCTTCGACACTCAGGAAGGCGATGGTGGCTCCACGACGTTCCAAGTCGTTACGACCATATCCAGCGATT CGAATTCCATTCAAGTCGCGATATGTGACAAGATCCCAAACTGCCTAACCTACATGTCAACTTTCCTCTCGTGTCTTGTATTCGCATTTGTGCTCTCCTG GAAGCTTGCGCTGGCTGCACTCCCACTAACCTTCTTGTTCATAGTCCCGGGCCTAGTGTTCGGGAAGCTAATGATGGATGTGATAATGAAGATGATCGCA TCGTACGGAGTTGCTGGAGGGATTGCAGAACAAGCGGTTTCTTCAGTAAGAACTGTCTACTCTTACGTGGCAGAGAAGAAAACCTTGGAAAGTTTCAGCA GTGCGCTTGAGACGACATTGGCGTTGGGTGTGAAGCAAGGTTTTGCAAAGGGACTGTTGATGGGGAGTATGGGAATGATCTATGTTGGATGGGCTTTCCA GGCATGGGTCGGTACCATTCTGGTCTCTGAGAAGAATGAAAAAGGTGGTTCCATTTTTGTAGCTGGAATCAATATCATCATGGGAGGACTGAGCGTTTTG GGTGCGCTTCCGAATCTGACATCCATCACAGAGGCAACAATTGCAGCGACTCGGATTTCGGAGATGATTGATCGAGCTCCAGATATAGATGCGGAAGAAA AGAAGGGGAAAGCACTGTCTCATATAAGAGGAGAGATAGTGTTCAAGTACGTCCATTTCTGCTATCCATCAAGACCTGAGACCCCAGTTTTACAAGCGCT GAACCTCAGGATTCCACCTGGTAAGACGGTGGGTCTTGTTGGTGGGAGTGGTTCGGGGAAGTCCACAACCATTGCTTTGCTCCAGAGGTTTTACGACCCG ATTCAGGGCGATATTCTGTTAGATGGGCACAAGATCAAGAAACTTCAGCTCAAATGGCTGAGGGCTCAAATGGGTCTGGTTAATCAGGAACCTGTCCTGT TCGCAACGTCCATAAAGGAGAATATTTTGTTTGGGAAGGAAGGTGCTACGTCGGATGATGTTATCAATGCTGCTCAAGCTGCCAACGCTCATGATTTCAT CGTTAAACTTCCTGATGGATATGAAACTCAGGTGGGACAATTTGGATTCCAAATGTCTGGGGGACAGAAGCAGCGGATAGCCATTGCAAGAGCTCTCATC AGAGAGCCCAAAATCCTGCTGCTTGACGAAGCAACGAGTGCTCTGGATACACAGTCTGAAAGAATAGTACAGTCTGCAATCGACCAAGCATCAAAGGGAA GGACAACTATCACCATTGCTCATCGCCTCTCCACCATCAGAACAGCAAGCCTCATTGTGGTTTTCCAACAAGGCCAAGTGATCGAAGCCGGAACGCACGA GGAGCTGATGGCAAAGAACAACAACGATGGTCAAGAAGGAGGAGAGTACTCCAAGATGGTAAGTCTGCAGCAGGCAGCAACTGAAAATGAATCCTACGAT GAGTTTACTCGTAATTTCGAGGGACGAAAGCGTCGCGGCAGCAGCAATAGGAAGAGCCCCGGACCTAGCCCTCGCATCGGAAGTGCAAGGTCAAGTGCAC CTAGCCCCGCACGCAGCATCAGGTCAAGTGCTCCACCGACTCCAAGGTTCAGCCCTGCTAGTCCTGCAAGCCCCTTTAGTACAGCAATGTCTATGGGAAC TCCATATTCCTATTCGATATATAACCCCGATGATAGCTATGATGATGATGATGATGAATATGATCGCTCAGCTTATCCTGCTCCATCTCAATGGAGACTG CTGAAAATGAACGCCCCTGAATGGGGGACAGCGGTTATCGGATGCTTGGCCTCGATTGGTTCCGGTGCAGTCCAGCCCATCAATGCATATTGCGTCGGAT CTCTTATATCAAACTACTTCCAAACCGATGAAGGTGCTATGAAGCATAAATCCAGGAACCTCTCCCTAGTGTTCCTAGGCATTGCTGCTCTCAATTTCAT CTCTGGCCTAGTGCAGCACTACAGCTTTGCTGTAATGGGAGAAAAGCTTACCAAAAGGGTCCGTGAGAAGCTGCTTGAAAAGCTCATGACTTTCGAGATT GGATGGTTCGATGACGACGAAAACACAAGCGCTGCAATCTGCGCAAGGTTAGCAACAGAAGCAAGCATGGTCCGGTCCTTAGTCGGGGACCGGGTTTCGC TGCTGGTTCAAGCCTTCTTCGGATCAATTTTCGCGTCGCCTACGCACTTGCGCTGGCCCTGTCTTGGAGGCTAG
AA sequence Show only first row Show all	>Lus10036617 pacid=23174677 polypeptide=Lus10036617 locus=Lus10036617.g ID=Lus10036617.BGIv1.0 annot-version=v1.0 MGEKGGGMFRFADGTDKLLMFLGTLGCIGDGMQYALTMFVLSTVINEYGDPNATLSYATVNKYSLRLLYVSIFVGAAAFVEGMCWTRSAERQTSRMRTRY LKAVLRQDVGFFDTQEGDGGSTTFQVVTTISSDSNSIQVAICDKIPNCLTYMSTFLSCLVFAFVLSWKLALAALPLTFLFIVPGLVFGKLMMDVIMKMIA SYGVAGGIAEQAVSSVRTVYSYVAEKKTLESFSSALETTLALGVKQGFAKGLLMGSMGMIYVGWAFQAWVGTILVSEKNEKGGSIFVAGINIIMGGLSVL GALPNLTSITEATIAATRISEMIDRAPDIDAEEKKGKALSHIRGEIVFKYVHFCYPSRPETPVLQALNLRIPPGKTVGLVGGSGSGKSTTIALLQRFYDP IQGDILLDGHKIKKLQLKWLRAQMGLVNQEPVLFATSIKENILFGKEGATSDDVINAAQAANAHDFIVKLPDGYETQVGQFGFQMSGGQKQRIAIARALI REPKILLLDEATSALDTQSERIVQSAIDQASKGRTTITIAHRLSTIRTASLIVVFQQGQVIEAGTHEELMAKNNNDGQEGGEYSKMVSLQQAATENESYD EFTRNFEGRKRRGSSNRKSPGPSPRIGSARSSAPSPARSIRSSAPPTPRFSPASPASPFSTAMSMGTPYSYSIYNPDDSYDDDDDEYDRSAYPAPSQWRL LKMNAPEWGTAVIGCLASIGSGAVQPINAYCVGSLISNYFQTDEGAMKHKSRNLSLVFLGIAALNFISGLVQHYSFAVMGEKLTKRVREKLLEKLMTFEI GWFDDDENTSAAICARLATEASMVRSLVGDRVSLLVQAFFGSIFASPTHLRWPCLGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036617 [exp]	0	1
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	12.2	0.8269
AT3G14880			unknown protein		Lus10013711 [exp]	17.5	0.8231
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	21.7	0.8211
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	24.7	0.8206
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	28.3	0.8190
					Lus10009618 [exp]	31.0	0.8190
AT1G15670			Galactose oxidase/kelch repeat...		Lus10029329 [exp]	31.6	0.6618
					Lus10005830 [exp]	33.5	0.8190
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	35.8	0.8190
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	37.9	0.8190

Compare expression of checked genes

Lus10036617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.