Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54730 456 / 3e-149 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G03380 403 / 1e-126 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT1G54710 381 / 1e-118 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT2G40810 55 / 1e-07 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 54 / 4e-07 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT5G05150 52 / 7e-07 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT3G62770 52 / 1e-06 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035835 [exp] 1407 / 0 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10018960 [exp] 435 / 4e-138 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 414 / 1e-129 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 404 / 5e-127 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 388 / 3e-123 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10029900 [exp] 57 / 3e-08 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 54 / 5e-07 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10001580 [exp] 53 / 7e-07 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10003694 [exp] 53 / 8e-07 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132700 [exp] 835 / 0 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 833 / 0 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 435 / 2e-138 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.013G028200 [exp] 425 / 1e-134 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.019G062800 [exp] 55 / 2e-07 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 54 / 5e-07 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 49 / 1e-05 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 45 / 0.0002 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 44 / 0.0003 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10036618 pacid=23174355 polypeptide=Lus10036618 locus=Lus10036618.g ID=Lus10036618.BGIv1.0 annot-version=v1.0 ATGAGGAACAGTACTGGCGATCGGCCGCAGCAGCAGAAGCATACGCAGGGACGAGGTGATGGATTTCTGCCCAACTCCTTCCGTTCGATTTCCAGCTACT TGAAGATCGTTTCATCGGGAGCTTCCACGGTGGCCAAGTCTGCTGCCTCGGTTGCCCACTCAATCGTCGTCGAGAAAGAAGATGATCCTAAGTACTATGA TCAGGTATACTGGGGTGGGTTTGACAAGTTAGAAACTGAGGGAAACATTGCTCGGCAGGTTCTGCTGCTAGGTTGTCGTTCTGGTTTTCAGGTTTGGGAT GTTGAGGAAGCAGATAATGTTCACAACCTAGTTTCCAGACAGGATGGCCCCGTGGCATCCTTGCAAATGCTCCCTAAACCCATTTCTTCAAACAGAGGAG GAGATAAATTTGCTAATTGCAGACCAATGGTTGTTGTCTGCTCAGATGGTTTCCTTGCTGGAGCTTGTAACATGCAGCATAGACCAGATCTTCCCTCCAA TGGTACTCTTCCCAATTACCCAGAAGTGAGCAATGGGAATTTTGTGCCCACTACTGCTCTTTTTTATTCCTTGAAATCCCATTCTTACGTACATGCCCTC AAGTTCAGATCAGCTATTTATTCTGTAAGGTCCAGCGCCCGGGTTGTTGCTATTTCTCAAGCAGCTCAGATACACTGTTTTGATTCCACAACTCTTGAGA AGGAGTACACTATCCTCACAAACCCGATAGTCCAAGGGCTCCAGAATGCTGTTGGTATAGGTTACGGTCCTCTTGCAGTCGGTCCGAGGTGGTTGGCATA TAGTGGGAGCCCAGTTGTACGATCTAATACTGGCCGTGTAAGCCCACAGCACGTTGCACCATCTATGAGCAGCCTTTCTGGTTTTAATTCAAACAGATAT CCAGTGGCACAATATGCAAAAGAATCTAGCAAGCAACTTGCTTCTAGAATTGTCACCTTAGGTGACAAGGGCTACAAGAAGTTGACCAGGTATTGTTCAG AGCTCCTACCAGATTCCCAGGGCTTGAAAGAGAATGGAGTTCTTAATGGCCACTTTCGTGATGCTGATAAAATAGGAATGGTTATTATCAGAGATATTAT TAGTAAGCATGTTGTCACCCAGTTTAGGGCCCACAAGAGTCCTATTTCAGCCTTGTGCTTTGATCCTAGCGGGACTCTTTTGGTCACTGCTTCTGTACAA GGCCATAACATTAACGTTTTCAAAATAATGCCTGGATACACCGTGCGCACTTCAGCAGGTGATTCTGATGGATCTTATGTTCACCTTTACAAGTTGCAAC GTGGTTTTACAAATGCTGTTATCCAAGATATCAGTTTCAGCGATGACAGTCAGTGGATCATGATAAGTTCATCAAGGGGAACAAGCCATTTATTTGCTAT TAATCCTTTTGGAGGATCTGTGAAGTTCGACTCTAATTATGATAGTTATGCTAGAAAGAATGGTGGAGAAAGCATGATGATCAAATCTGCTGTCCGCTGG CCACCGAGTTTAGGGTTCCAAATGTGCAGTGGCCTCAGTGCATCTGGGCCTCCTGTTACTCTATCTGCTATTAGCAGGATTAGAAATGGAAGTAATGGTT GGAAAGGCACTGTAAGTGGGGCTGCTTCAGCTGCAACAGGCAGACCCGGTTCAATTCCTGGCCCAATTGCTTCATCTTTCCACAACTGCAAGAGAAATAG CACTTCATGTGAAAATGGGAACTCTACAAAGAAAAAATACCATCTCCTCGTTTTCTCTGCCTTTGGGTTTATGATACAGTATGCAATGCAAATATCAGCT GCTGCGGATTTGTCACCTGTTCCTGTGTCAAACACTGACTATGACATCATTGAAGAAAGTGATGGAAGATTAGTGGTTGATACAATTCAGAAATGGAATA TATGCGAGAAACAACACCAAAAAGAGCGTCAAGATAACGTCGACTTATATGGTGATAATGGTCATTTAGGAATCAGTAAGATATATCCAGAATGCTCCAA AAACTCAAATAGTATTCATCCGCAATGTGATGGTCTGGACTTAAATGTGAAGAGCAGCAGTGAAGACAAATATCCTCTGTATATTTCAGAAGCTGAACTG CAGACGTATCAATCTGGTGAACCATTGTGGGGAAAGGCTGAGATCTATTTCCAATCAGTGATTAGACAAGCAACAATGATGGATGAAGAAAATGGAAGCC AAGGTGAGCTAGAACTGGAAAGTATTCCAGCGTGTCTCATTGCAGCAAGGCGTAAGGACCTACTTCCAGTTTTCGACCGGGTCTATGCTCCAGCATTACT TGGAAGGCGAGCTGATCTGAATTACCATCATATTTGCAGCAGTGCTGCCCTAGACAGCCATCAAAGTTATCGGCTGTCTGAAAATGAAAGATCTGTATAC AAGACAAGCTCTGCTTCTCTCGGCATAGTTACTGGACACTCGGTAGTGCCTGAGCTTTACAACAGATCTGAGGATGCACGTTTTGCTTGA
AA sequence Show only first row Show all	>Lus10036618 pacid=23174355 polypeptide=Lus10036618 locus=Lus10036618.g ID=Lus10036618.BGIv1.0 annot-version=v1.0 MRNSTGDRPQQQKHTQGRGDGFLPNSFRSISSYLKIVSSGASTVAKSAASVAHSIVVEKEDDPKYYDQVYWGGFDKLETEGNIARQVLLLGCRSGFQVWD VEEADNVHNLVSRQDGPVASLQMLPKPISSNRGGDKFANCRPMVVVCSDGFLAGACNMQHRPDLPSNGTLPNYPEVSNGNFVPTTALFYSLKSHSYVHAL KFRSAIYSVRSSARVVAISQAAQIHCFDSTTLEKEYTILTNPIVQGLQNAVGIGYGPLAVGPRWLAYSGSPVVRSNTGRVSPQHVAPSMSSLSGFNSNRY PVAQYAKESSKQLASRIVTLGDKGYKKLTRYCSELLPDSQGLKENGVLNGHFRDADKIGMVIIRDIISKHVVTQFRAHKSPISALCFDPSGTLLVTASVQ GHNINVFKIMPGYTVRTSAGDSDGSYVHLYKLQRGFTNAVIQDISFSDDSQWIMISSSRGTSHLFAINPFGGSVKFDSNYDSYARKNGGESMMIKSAVRW PPSLGFQMCSGLSASGPPVTLSAISRIRNGSNGWKGTVSGAASAATGRPGSIPGPIASSFHNCKRNSTSCENGNSTKKKYHLLVFSAFGFMIQYAMQISA AADLSPVPVSNTDYDIIEESDGRLVVDTIQKWNICEKQHQKERQDNVDLYGDNGHLGISKIYPECSKNSNSIHPQCDGLDLNVKSSSEDKYPLYISEAEL QTYQSGEPLWGKAEIYFQSVIRQATMMDEENGSQGELELESIPACLIAARRKDLLPVFDRVYAPALLGRRADLNYHHICSSAALDSHQSYRLSENERSVY KTSSASLGIVTGHSVVPELYNRSEDARFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	0	1
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	1.4	0.9480
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	3.2	0.9327
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	4.2	0.9425
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	7.3	0.9324
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	9.4	0.9304
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	14.1	0.9173
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Lus10035979 [exp]	16.9	0.9208
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	19.2	0.9198
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	20.2	0.9117
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	20.3	0.9340

Compare expression of checked genes

Lus10036618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.