Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15380 1111 / 0 Plasma-membrane choline transporter family protein (.1) AT4G38640 56 / 8e-08 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035837 [exp] 694 / 0 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10025051 [exp] 64 / 2e-10 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034492 [exp] 49 / 1e-05 AT4G38640 645 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034295 [exp] 44 / 0.0005 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 44 / 0.0006 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121100 [exp] 1217 / 0 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G132900 [exp] 59 / 1e-08 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 55 / 2e-07 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.008G118200 [exp] 52 / 1e-06 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.010G128100 [exp] 52 / 1e-06 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10036620 pacid=23174430 polypeptide=Lus10036620 locus=Lus10036620.g ID=Lus10036620.BGIv1.0 annot-version=v1.0 ATGAGCCGGCCGCTTGGGGCGGTGATAGGGAGGTACCCATCGAGTGACGGCAGCACTCAGATTGATGGCATCATTAGGCGTAGCAGGAAGTGCAGGGATG TCGCATTTCTGGTTGTGTTTATCGCCTTTTGGGTTGCTATGATTGTCAACTCCAGCTTTGGATTCAACCAAGGAAATCCATTAAGACTTACTTATGGACT GGACTACAAAGGAAATGTTTGTGGTGACAAACATGCACATCCTAATCTGCGTGAATTGGAGCTTACATACTGGGCCAATCCCAACCAGGTCTATCTTAGT GGTTCTAAGGACAGCCAATTTAAGTTGGCCAATGCTAGGAGTATATGCTTGTTGGACTGTCCAAGACCCACAGATGATGGCTTGAATTGGGTCTGTGATT ACCCAGAGGGTGATATTCGTATATCAATGGATGATTGGATTGACAGGAATTATGATTATTACGAGTTCCTTACTCCTGAAATGAGGAACACATCACTCCA ACTCCAGGGTCCATGTTACCCTGTCATTTTTCCAAGCGTGAATGTATACTGGAGGTGTGAATTTGTTGCCCATGCGTCTAATGCATCTTTGCGACATTGG CAGCAAATGGGTGGAGTGAATATCAATGAGGGTATTATAATTGACAAAACTATTCACAAGTCAATCAATGCTCGTTCTTCTGTGCTTAAGAGATATATGG CAGATATTGGAAAGTCATGGCCGGTACTAATTGTTTGTGGAGGACTATTACCTCTACTTTTGTCGGTGATTTGGTTGCTGATGATTCGGCATTTTGTTGC TGCCATGCCATGGGTTACTGTTGCCCTCTTCAATATTCTTATAGTTTCAGTAACGATGTTTTACTACTTGAAAGCTGGCTGGATTGGAAATGATGCCGTC TCCCCTGTCATTGGCCCTCCTGATCCATACTACCATGTCTTTGGACGAGAACTAAATCATGTCCGTGCTGTTGCTATTCTGATGACCTTTATAATGGTGG TTTCAGTCCTGACATCAATTGCCATTGCCAGACGCATTCTTATGGCCACATCTGTACTCAAGGCAAGTATGATTCCCAGAAATTTGCAATTGGTTCGATC AACGGTAGCTGCAAAGGTCATTGGAGAAGTTCAGGCACTAATAATTTTCCCAGTCATACCATACGTTATGCTTGCAATATTCTACATGTTCTGGTTTTCA GCTGCTTTGCATCTCTTTAGTTCTGGGCAGATTGTCCAGAATGATTGCAGCTCTAATTGCTGCGCCTATGATCTTTTATCAAAACGGGTGAACTGTGATC GGTGTTGTGGTTATGGCATTCGTTATACTCCTCATATTGCTATTGCAATCTTTTTCCACCTATTTGGATGTTTCTGGGCCACTCAATGTTTCATAGCGTC TTCTGCAACTGTCATTGCTGGCTCAGTTGCATCATATTATTGGGCTCGTGGTGAGACATCGTCAGAGATTCCATTTCTTCCAGTTTTTGGCTCCATGAAA AGGCTTATACGCTACAGCCTTGGGTCTGTTGCCCTAGGTTCACTGGTGGTCTCATTTGTGGAATCAATACGCTTCATCCTGGAATCAATTCGTCGCAAAT TGAAAGTTGCTAATACTATGCCGGACAGCTGGGTTGGGAAGATGATGCACCATTTCTTCAGATACTGTCTCAAGTGCATTGAATGGACCATAAAATCGGT GAACCGCAATGCATATATAATGATAGCTATTACAGGTAAGAGCTTCTGCAGGTCATCTGCTATGGCAACAGAATTGATCTTGAGCAACATACTGAGGATA GGGAAAGTGAATGTGGTTGGAGACATAATTTTGTTTCTGGGCAAGTTGTGCGTGAGCCTATCAAGTGCAGTGTTTGCTTTCCTCATGTTGGATACTCACA AGTTTAAATCTTCGCACAACAAGATTTCATCCCCACTCTTGCCTGTGGCGGTATGCTGGGCTCTTGGGTACGTGGTGGCGACTCTATTCTTTGCGGTGGT GGAGATGTCGATCGATACAATAATACTGTCATTCTGTCAGGATTCAGAGGAGCACCAGGGGACGGCTCAGTATGCTCCTCCTCTTCTCATGGAGACACTA AATGATCAGAGTGAGACGCAGAGACTAACTCAATGA
AA sequence Show only first row Show all	>Lus10036620 pacid=23174430 polypeptide=Lus10036620 locus=Lus10036620.g ID=Lus10036620.BGIv1.0 annot-version=v1.0 MSRPLGAVIGRYPSSDGSTQIDGIIRRSRKCRDVAFLVVFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHAHPNLRELELTYWANPNQVYLS GSKDSQFKLANARSICLLDCPRPTDDGLNWVCDYPEGDIRISMDDWIDRNYDYYEFLTPEMRNTSLQLQGPCYPVIFPSVNVYWRCEFVAHASNASLRHW QQMGGVNINEGIIIDKTIHKSINARSSVLKRYMADIGKSWPVLIVCGGLLPLLLSVIWLLMIRHFVAAMPWVTVALFNILIVSVTMFYYLKAGWIGNDAV SPVIGPPDPYYHVFGRELNHVRAVAILMTFIMVVSVLTSIAIARRILMATSVLKASMIPRNLQLVRSTVAAKVIGEVQALIIFPVIPYVMLAIFYMFWFS AALHLFSSGQIVQNDCSSNCCAYDLLSKRVNCDRCCGYGIRYTPHIAIAIFFHLFGCFWATQCFIASSATVIAGSVASYYWARGETSSEIPFLPVFGSMK RLIRYSLGSVALGSLVVSFVESIRFILESIRRKLKVANTMPDSWVGKMMHHFFRYCLKCIEWTIKSVNRNAYIMIAITGKSFCRSSAMATELILSNILRI GKVNVVGDIILFLGKLCVSLSSAVFAFLMLDTHKFKSSHNKISSPLLPVAVCWALGYVVATLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETL NDQSETQRLTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	0	1
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	3.0	0.8684
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	4.2	0.8913
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	6.2	0.8463
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	6.3	0.8687
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	9.3	0.8259
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	9.8	0.8485
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	14.0	0.8565
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	14.4	0.8541
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	14.9	0.8365
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	16.7	0.8441

Compare expression of checked genes

Lus10036620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.