Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54670 1075 / 0 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 1043 / 0 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT4G21270 899 / 0 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 887 / 0 ATK5 kinesin 5 (.1) AT5G27550 310 / 7e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 314 / 1e-92 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 315 / 3e-92 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G73860 287 / 2e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 283 / 2e-82 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G41310 283 / 4e-82 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035838 [exp] 1640 / 0 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10018384 [exp] 860 / 0 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10007629 [exp] 847 / 0 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10005582 [exp] 309 / 1e-90 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 309 / 1e-90 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 294 / 2e-87 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 294 / 1e-85 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029914 [exp] 287 / 6e-85 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032264 [exp] 283 / 2e-81 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416300 [exp] 1170 / 0 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G131900 [exp] 1165 / 0 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G031200 [exp] 921 / 0 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.004G031600 [exp] 892 / 0 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.011G140000 [exp] 313 / 5e-92 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 304 / 2e-91 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G436200 [exp] 308 / 3e-90 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 291 / 7e-87 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 290 / 2e-84 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.014G125700 [exp] 288 / 5e-84 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10036621 pacid=23174658 polypeptide=Lus10036621 locus=Lus10036621.g ID=Lus10036621.BGIv1.0 annot-version=v1.0 ATGGCTTCTAAAAACCAGAACAAACCTCCACTAAACGCCACCATGCCCATTTCAGCTCCTCTGCCGTCTTCACGTAGGAAGTCCATTGGTGGATATGAGC TGAGTTCAGATACAACAAGGTATAAGCTTGGAGTTGATAATATGGTTGGGTCTGCCAGTATTAACGGAAGAATGAGGCAAGCATTCTCCATTATGAATGG AGAACAGGAGCTTACTCCTAGCAGTGACCCTCCGAGCAATGCTGGGTCTGAGTATGGTGGAGGAGGAGCCAACATTGAGTTCACCAGAGAAGATGTTGAT ACTTTGTTGAATGAGAGAATGAGATACAAAAGCAAGTACAACTACAAGGAGAGGTGTGAAAATATGATGGACTATATAAAAAGGTTAAGGCTTTGCATTA GATGGTTTCAAGATGTAGAAGGCAATTACCTGTTTGAGCAGGAGAAATTGCTTACCGCTTTGGAATTTGCTGAAGCTAGATGTGCTGAATCAGAATTGGT TTTGAAGAACAGGGAAGAAGAACTGAATTTAATTATAGTGGAGTTGAGAAAGAGTCTTGCTTCTTTACAAGATAAACTCTCCAAAGAAGAATCAGAGAAG ATGGTTGCAGTGGATTCTCTTTCAAAGGAGAAAGAGGCGAGAGCTGACATGGAGAAGTCTCGGGCATCTCTAACTGAGGAGCTGGGGAAGGTCCAAGGAG AGCTTCAGAGTGCTAATCAGAGGATAACTTCAGTAAATGATATGTACAAGCTGTTACAAGAATATAATTCAAGTTTACAGCTATACAACACTAAACTTCA GACGGATCTGGATGCAACCCATGAGAATCTCAAGAGCGCAGAACAAGAGAAAGTCACTATAGTGGAGAGCCTGGGCAACTTAAGGGGTCAGTACAAGTCA TTGCAGGAGCAATACATGTCATCTCAAGAATCAGCAGATGAAGCTGTGAAACAGAAGGATCTGTTGATGAGTCAAGTTTCATCTTTAATGGGAGAGCTGA AACAAGTGAGAGATGACCGTGATCGACTAACACTGCAAGTGCAAGCTTTGACAACTGAAGTGACCAGTTACCAACAAGAGTCGCAAAAATCAAATGAGTT CGAGGAAAAATATCTGTTCCAAAGTAAAGAGATGGTGGCCTTGCAGGTAAAGTTAGATGCTGCTGAGAGTAGATTAAAGGTGTCCGACCTGTCTGCATTT GAGACAAGAACCGAGTACGAAGCACAGAAACAACTTGTACTAACATTACAAAGTCGGTTGGAAGATGCCGAGCAGAAAGTTATTGAAGGAGAGCAACTGC GGAAGAAGTTACATAATACAATCTTGGAACTCAAAGGTAACATTCGTGTCTTTTGTCGTGTGAGGCCTTCATTGAATGATGATATTCATGGCAATGAAAG GAAGGTTGTTTCTTATCCCACTTCACTAGAAGCTCTTGGACGCGGCATTGATTTAAATCAAAATGGCCAAAACTACTCATTTTCTTTTGATCAAGTTTTT ACCCCCGAGTCATCACAAGAGGACGTATTTGAGGAAATCTCACAGCTTGTTCAGAGTGCTCTTGATGGCTACAAGGTATCCATTTTTGCCTACGGGCAAA CAGGATCTGGTAAAACATATACCATGATGGGCAAACCAGGGCAACCTGAGCAAAAGGGACTGATTCCTCGAACGTTAGAACAAATTTTTCAAACAAGGGA ATCCCTTAAATTGCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAGATTTACAATGAAACAATTCGCGACTTGTTATCAACCAATCGAGATGTA TCCAGAGATAGCACTCCTAATGGAAAGCAATATGCAATCAAACATGAACCCAACGGGAACACAACTGTATCCGACCTAACTGTTGTAGATGTTCAAAGCT CTAGGGAGGTCGCTTATCTGTTGGACCGGGCTGCTCACAGCAGGTCAGTTGGGAAGACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTTTTCAC TCTACGAATATCTGGCATCAATGAGAGCACTGAACAACAAGTACAGAGTGTTCTGAATCTTATTGATCTTGCTGGAAGTGAGCGCCTTTCTAAGAGTGGT TCCACTGGCGATAGACTCAAAGAAACACAAGCCATCAACAAAAGTCTGTCCTCACTAAGCGATGTCATATTTGCCTTGGCAAAGAAGGAAGATTTTGTAC CATTTAGGAACTCAAAGCTCACTTACCTACTTCAGCCATGTCTAGGTGGAGATTCAAAGACACTGATGTTTGTAAATATATCTCCGGAGCCATCATCTGT TGGTGAGTCACTGTGCTCACTGAGATTTGCATCCAGAGTTAACTCGTGCGAGATAGGTGTTCCCCGACGGCAGACCAACTTGCGATCCCTAGACTATCGG TTGAGCTTGGGTTGA
AA sequence Show only first row Show all	>Lus10036621 pacid=23174658 polypeptide=Lus10036621 locus=Lus10036621.g ID=Lus10036621.BGIv1.0 annot-version=v1.0 MASKNQNKPPLNATMPISAPLPSSRRKSIGGYELSSDTTRYKLGVDNMVGSASINGRMRQAFSIMNGEQELTPSSDPPSNAGSEYGGGGANIEFTREDVD TLLNERMRYKSKYNYKERCENMMDYIKRLRLCIRWFQDVEGNYLFEQEKLLTALEFAEARCAESELVLKNREEELNLIIVELRKSLASLQDKLSKEESEK MVAVDSLSKEKEARADMEKSRASLTEELGKVQGELQSANQRITSVNDMYKLLQEYNSSLQLYNTKLQTDLDATHENLKSAEQEKVTIVESLGNLRGQYKS LQEQYMSSQESADEAVKQKDLLMSQVSSLMGELKQVRDDRDRLTLQVQALTTEVTSYQQESQKSNEFEEKYLFQSKEMVALQVKLDAAESRLKVSDLSAF ETRTEYEAQKQLVLTLQSRLEDAEQKVIEGEQLRKKLHNTILELKGNIRVFCRVRPSLNDDIHGNERKVVSYPTSLEALGRGIDLNQNGQNYSFSFDQVF TPESSQEDVFEEISQLVQSALDGYKVSIFAYGQTGSGKTYTMMGKPGQPEQKGLIPRTLEQIFQTRESLKLQGWKYEMQVSMLEIYNETIRDLLSTNRDV SRDSTPNGKQYAIKHEPNGNTTVSDLTVVDVQSSREVAYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGINESTEQQVQSVLNLIDLAGSERLSKSG STGDRLKETQAINKSLSSLSDVIFALAKKEDFVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEPSSVGESLCSLRFASRVNSCEIGVPRRQTNLRSLDYR LSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	1.0	0.9713
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	1.4	0.9639
AT3G01810			unknown protein		Lus10015805 [exp]	3.0	0.9562
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	3.5	0.9461
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	3.9	0.9496
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	4.0	0.9506
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	6.7	0.9258
AT5G42710			unknown protein		Lus10010806 [exp]	8.0	0.9352
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	8.1	0.9311
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	8.5	0.9063

Compare expression of checked genes

Lus10036621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.