Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01440 237 / 2e-79 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT4G21280 68 / 9e-14 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT4G05180 64 / 3e-12 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT1G14150 48 / 1e-06 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035839 [exp] 436 / 7e-158 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10018385 [exp] 59 / 3e-10 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 57 / 9e-10 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 49 / 8e-07 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 45 / 1e-05 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416400 [exp] 217 / 2e-71 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Potri.011G031300 [exp] 62 / 2e-11 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.004G031500 [exp] 59 / 1e-10 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.017G129700 [exp] 45 / 7e-06 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10036622 pacid=23174413 polypeptide=Lus10036622 locus=Lus10036622.g ID=Lus10036622.BGIv1.0 annot-version=v1.0 ATGGCCAACTTCACAAACTTAAACCATCCAACAGAATCCATCCCAAACCTCCACACTAACAACATTAACTCTAAAACTTGCGGAAACCCACCAAAGCTCC CACCACTTGCTCTTTCCAGGAAACCAGAGCAGCCACTGAAGTTCCAGACCACCAGAAGATTAGCATTAGGCCTTATCTCCATAGCCCCTCTCGTTGCGAA ATCTGGGGTTGGAGATTCTCTTGCTGCCGATAATGGCTTGTGGATCGACGGGCCGTTGCCCATTCCCACCATTGACAACAAAGAGCTTGCGAATCCAAGG ACAGGGACTCGTTCTTTCCTGAAGAACGGAATCTACATAGCCGACATTGCAGTGAAAGGGAGACTTTACAGGATCATGAAGTCTGCTTTTGATCTTCAGG CTATGGAGGATTTGATTGGTCCAGACACACTCAACTATGTCAGGAGATACCTCAGGCTCAAGTCCACCTTCTTGTACTACGATTTCGACAATGTCATCTC TTCTGCTGCTGCAGAAGATAAGAAGCCTCTCCTCGATCTCGCTATCAGACTTTTCGACAATTTTGAACAGCTTGAGGAAGCAACAAGGAAGAACAACCTG CCTCAAACATTATCGTGTTATCAGGAGACAAGCTTGCTTCTCAAGGAGGTGATGGACATGGTGGCCTAA
AA sequence Show only first row Show all	>Lus10036622 pacid=23174413 polypeptide=Lus10036622 locus=Lus10036622.g ID=Lus10036622.BGIv1.0 annot-version=v1.0 MANFTNLNHPTESIPNLHTNNINSKTCGNPPKLPPLALSRKPEQPLKFQTTRRLALGLISIAPLVAKSGVGDSLAADNGLWIDGPLPIPTIDNKELANPR TGTRSFLKNGIYIADIAVKGRLYRIMKSAFDLQAMEDLIGPDTLNYVRRYLRLKSTFLYYDFDNVISSAAAEDKKPLLDLAIRLFDNFEQLEEATRKNNL PQTLSCYQETSLLLKEVMDMVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	0	1
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	1.0	0.9720
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	3.5	0.9490
					Lus10008155 [exp]	4.9	0.8918
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	8.0	0.9371
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	8.1	0.9374
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	9.4	0.9174
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	9.8	0.9270
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	10.2	0.9338
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	11.2	0.9317
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	13.7	0.9055

Compare expression of checked genes

Lus10036622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.