Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26170 127 / 5e-37 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT5G64810 124 / 1e-35 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT4G18170 117 / 2e-31 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 112 / 6e-30 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 112 / 4e-29 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT2G47260 111 / 4e-29 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT2G46130 104 / 7e-29 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT1G69310 107 / 4e-28 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G46350 107 / 1e-27 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT1G64000 103 / 1e-27 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035841 [exp] 303 / 1e-105 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10006848 [exp] 122 / 2e-34 AT5G26170 133 / 7e-39 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10004612 [exp] 112 / 1e-29 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 112 / 2e-29 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10012029 [exp] 113 / 3e-29 AT1G13960 108 / 4e-25 WRKY DNA-binding protein 4 (.1.2) Lus10017067 [exp] 111 / 5e-29 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036401 [exp] 107 / 7e-29 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10004537 [exp] 108 / 1e-28 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10007906 [exp] 107 / 1e-28 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079800 [exp] 137 / 6e-41 AT5G64810 140 / 3e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.005G085200 [exp] 131 / 4e-38 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.006G224100 [exp] 117 / 3e-33 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.010G147700 [exp] 116 / 5e-31 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G103300 [exp] 113 / 1e-29 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G059100 [exp] 112 / 1e-29 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.002G164900 [exp] 108 / 2e-29 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.014G090700 [exp] 108 / 2e-29 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.015G099200 [exp] 107 / 4e-29 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.005G203200 [exp] 110 / 7e-29 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10036624 pacid=23174563 polypeptide=Lus10036624 locus=Lus10036624.g ID=Lus10036624.BGIv1.0 annot-version=v1.0 ATGAACTTGATTCGTGCTCCTCCTCCTCCTCCTCCTCCGCCATGCCAAAACCCTAACAACAGTAATCCTTTTCGACAATTCGCTGATCCTCTGGATTTCC AATTCTCCGATTTCTTGCTTCCCCCAGATCCATTATTCAATCATGATCATGACAGTAGGCATGAAGAAATTGATAATATTTTTGCTAGTACTGGTAAGTA CAATAATAGTTATTCATTTCCACAGAGCAATATCACGGCAACCTCACCCCTCCAAGTTGGATCCGATGGCAGCTGCAACTCCTCCTCCTGGACCATGATC GGTAGAAATGACGTCAAAGGAAGTGGGAGGATGAGGAAGGTTGAAGAGCAGAAGCAGAGGAAGGGGGAAGTGGTTAATAGAAGAGTGGCATTCAGGACCA AATCGGAAGTGGATGTGATGGATGATGGCTTCAAGTGGAGGAAGTACGGCAAAAAATCTGTCAAGAACACACCCTATCCCAGGAACTATTACAAATGTCC AAGTGTGGGATGCAATGTGAAGAAGAGAGTGGAAAGAGATAGAGAAGACTCGAGCTTTGTGATCACAACCTACGAGGGAGTTCACAACCATCATCGTCAT CAAATTTCACCTTTCAAAGTCCAAATGGAACTGCTTCGATAG
AA sequence Show only first row Show all	>Lus10036624 pacid=23174563 polypeptide=Lus10036624 locus=Lus10036624.g ID=Lus10036624.BGIv1.0 annot-version=v1.0 MNLIRAPPPPPPPPCQNPNNSNPFRQFADPLDFQFSDFLLPPDPLFNHDHDSRHEEIDNIFASTGKYNNSYSFPQSNITATSPLQVGSDGSCNSSSWTMI GRNDVKGSGRMRKVEEQKQRKGEVVNRRVAFRTKSEVDVMDDGFKWRKYGKKSVKNTPYPRNYYKCPSVGCNVKKRVERDREDSSFVITTYEGVHNHHRH QISPFKVQMELLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	0	1
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	1.4	0.9692
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	2.0	0.9716
					Lus10003893 [exp]	2.4	0.9664
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	4.0	0.9640
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	4.5	0.9396
					Lus10010828 [exp]	6.3	0.9125
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	7.4	0.9565
AT3G58880			F-box/RNI-like superfamily pro...		Lus10020329 [exp]	7.7	0.9453
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	8.5	0.9180
AT2G39440			unknown protein		Lus10040607 [exp]	8.9	0.9416

Compare expression of checked genes

Lus10036624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.