Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04940 1323 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 71 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 70 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 69 / 1e-11 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 67 / 6e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 63 / 7e-10 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G18080 62 / 8e-10 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 60 / 3e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 60 / 7e-09 transducin family protein / WD-40 repeat family protein (.1) AT5G13480 58 / 3e-08 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035842 [exp] 1407 / 0 AT4G04940 1137 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 76 / 9e-14 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 76 / 9e-14 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 69 / 1e-11 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 68 / 4e-11 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10039636 [exp] 63 / 4e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 62 / 5e-10 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026837 [exp] 63 / 1e-09 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017569 [exp] 61 / 2e-09 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078900 [exp] 1413 / 0 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G148066 [exp] 736 / 0 AT4G04940 701 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G148132 [exp] 459 / 7e-155 AT4G04940 442 / 1e-148 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 70 / 6e-12 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 70 / 8e-12 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 67 / 3e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 63 / 4e-10 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 62 / 4e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 62 / 5e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 61 / 1e-09 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04192 [flax] [poplar] Utp21 Utp21 specific WD40 associated putative domain
Representative CDS sequence Show only first row Show all	>Lus10036625 pacid=23174661 polypeptide=Lus10036625 locus=Lus10036625.g ID=Lus10036625.BGIv1.0 annot-version=v1.0 ATGGGGATATTCGAACCTTACAGAGCGATTGGATACATAACGAGTGGGGTTCCTTTCTCCGTTCAGCGGTTGGGTACTGAAACTTTCGTCACAGTCAGTG TGGGAAAGGCTTTTCAAGTTTACAATTGCTCTAAGCTCACATTGGTCCTTGTGAGTCCTCAACTTCCGAGCAAGATTCGCGCTCTAGCCTCTTATCGCGA CTTCACATTTGCTGCATATGCCAGCCACATTGCTGTGTTCAAACGTGCTCAACAGGTTGCTACTTTGAGCAGACACAGTGCCAAAATTGGTCGGTTGTTG GTCTTTGGAGATTACGTCCTCAGTGTTGATCTAGATGGGAATTTGTTTACATGGGCTTTTAAGGGTATTGACGGGGAGCCTGCTCCAATTGGACACATTA AGTTGGATGATGGTTTCACCCCCTCTTGTATACTTCACCCAGAAACTTATCTGAATAAGGTTGTGCTTGGCAGCCAGGAAGGTTCGTTGCAGCTGTGGAA CATCAGTACCAAAAAGAAACTTTATGAGTTTAGTCGTTGGAATTCTTCCATTACCAGTTGTGTGTCTTCACCAGCACTCGATGTTGTTGCTGTGGGTTGT GGTGATGGGAAGATTCACGTGCATAATATTCGCTATGATGAAGAGTTGGCTACCTTTTCCCATTCTACTCGTGGTGCAGTTACTGCCTTGTCATTCAGTA CAGATGGTCAACCACTTTTGGCATCTGGAGGTTCTTCTGGTGTTATCAGCATCTGGAATCTTGAAAAAAGACGGATTCAATCAGTCATTGGAGAGGCTCA TGACAGTGCAGTTGTTTCCTTGCACTTCTTTGCTAATGAACCTGTGCTGATGAGTGCAGCAGCAGATAACTCCCTCAAGATGTGGATTTTTGACACAAGT GACGGAGATCCTCGCCTTCTACGTTTTCGAAGTGGACACAGCGCTCCTCCACTTTGCATAAGGTTCTATGCAAATGGGAGACACATTCTGTCTGCTGGTC AGGATCGCGCATTTCGGCTTTTCTCTGTTATCCAGGATCAACAAAGTAGAGAGCTGTCCCAGCATCATGTATCAAAACGTGCCAAGAAACTCAAACTCAA GGAAGAGGAGCTGAAATTGAAGCCCGTTATTGCGTTTGATTGTGCTGAAATTAGGGAGCGCGATTGGTGCAATGTTGTTACATGCCATATGGACACGTCA GAGGCATACATATGGAGGCTTCAAAATTTTGTTCTGGGCAAGCATATCCTCAGGCCATGTCCAGAGAATCCAACACCTGTAAAGGCCTGTGCTATCAGTG CATGCGGCAATTTTGCAGTCCTGGGAACAGCAGGTGGCTGTATAGAACGATTCAACCTTCAATCAGGGATCAGCCGTGGTAGTTACCTTGACATGTCGGA AAGAAATCTTGCCCATAAAGGTGGAGTGGTAGGAGTTGCTTGTGATTCAACGAATACCCTAATGATAAGTGCTGGGTATCATGGAGACATAAAGGTTTGG GATTTTAAGGGACGTGCATTAAAATCCAGATGGGAAGTTGGATGTTGTCTCGTTAAGGCTGTTTATCATCGCTACAATGGTCTTTTTGCTACTGTTGCCG ATGATTTGGTTATCCGTGTATTTGATGTTGTGGCATCGAGAATGGTTCGCAAGTTTGAAGGTCACACAGACCGCGTTACAGATTTGTGTTTTAGTGAAGA TGGTAAATGGCTTTTGTCATCTAGTATGGATGGGACATTAAGAATATGGGATGTCATCTTAGCAAGACAAATTGATGCACTACACGTAGATGTTCCCATC ACAGCTTTGTCTTTGTCCCCAAACATGGATGTTTTGGCCACAACTCATGCTGATCAAAATGGCGTCTATCTATGGGTTAATCAGTCTATGTTCTCTCGAG GTACATCAGTCGATTCTTATGCTAGTGGGAAAGAAGTAGTTTGTGTGAAATTGCCATCTATATCTGCTACGGAAGATTCTCAAGACGCAGATTACGGTGG GTCTAAAACAAACGAGACATTGTGTAGTGAGGCCCCTGGTATGTCAGCTTTCAGTCAGCAACAAATCCCGGGTCTTGTAACGCTCTCTATGTTACCTAAA AGCCAATGGCAGAGCTTGATCAACCTAGACATCATAAAGGTACGCAATAAACCCATTGAACCGCCCAAGAAACCTGAAAAAGCTCCATTTTTCTTGCCTT TGGTTCCATCTCTTTCTGGAGATATTTTGTTTAAACCTAGTGACGCTGCCAAAGAGGATGGTATGGAAGTAGATGAATTGAAGAACAAGGGAAAACATGA GATGACACCTGTACCATTGTCAAAGTTTTCGGAACTTCTCCATTCATGTGCAGAGACAAATAGCTTTTCAGCATTCACTGATTACATCAAAGGTGTATCC CCGTCAAATCTGGATATGGAGCTTCGGATGCTTCAGATTATTGATGACGACGATGAAAAAGAAGAAGAAGAAGAAGAAGAGGTGGAAATGAAGCCCGAGC TTGTATCAATAGAACTCCTTTTCGATTATTTCATCCATGAGATATCCAGGAGAAACAACTTCGAGTTCATCCAGGCTCTGATAAGATTATTCCTCAAGAT TCATGGGGAAACAGTGCGCCGCCAGCCGAGGCTAAAGGATAAAGCCAAGAAACTAGTCGAAATTCAGTCAGCAGCTTGGCAGAAGATGGATAGACTGTTT CAGAGCACCAGATGCATGGTCACATTCCTTAGCAAATCACAGTTTTAA
AA sequence Show only first row Show all	>Lus10036625 pacid=23174661 polypeptide=Lus10036625 locus=Lus10036625.g ID=Lus10036625.BGIv1.0 annot-version=v1.0 MGIFEPYRAIGYITSGVPFSVQRLGTETFVTVSVGKAFQVYNCSKLTLVLVSPQLPSKIRALASYRDFTFAAYASHIAVFKRAQQVATLSRHSAKIGRLL VFGDYVLSVDLDGNLFTWAFKGIDGEPAPIGHIKLDDGFTPSCILHPETYLNKVVLGSQEGSLQLWNISTKKKLYEFSRWNSSITSCVSSPALDVVAVGC GDGKIHVHNIRYDEELATFSHSTRGAVTALSFSTDGQPLLASGGSSGVISIWNLEKRRIQSVIGEAHDSAVVSLHFFANEPVLMSAAADNSLKMWIFDTS DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQHHVSKRAKKLKLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTS EAYIWRLQNFVLGKHILRPCPENPTPVKACAISACGNFAVLGTAGGCIERFNLQSGISRGSYLDMSERNLAHKGGVVGVACDSTNTLMISAGYHGDIKVW DFKGRALKSRWEVGCCLVKAVYHRYNGLFATVADDLVIRVFDVVASRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDALHVDVPI TALSLSPNMDVLATTHADQNGVYLWVNQSMFSRGTSVDSYASGKEVVCVKLPSISATEDSQDADYGGSKTNETLCSEAPGMSAFSQQQIPGLVTLSMLPK SQWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPLVPSLSGDILFKPSDAAKEDGMEVDELKNKGKHEMTPVPLSKFSELLHSCAETNSFSAFTDYIKGVS PSNLDMELRMLQIIDDDDEKEEEEEEEVEMKPELVSIELLFDYFIHEISRRNNFEFIQALIRLFLKIHGETVRRQPRLKDKAKKLVEIQSAAWQKMDRLF QSTRCMVTFLSKSQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	1.0	0.9322
AT4G20160			unknown protein		Lus10036249 [exp]	2.0	0.9149
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	2.4	0.9009
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10028855 [exp]	2.6	0.8581
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	6.0	0.8784
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	7.1	0.8721
					Lus10042511 [exp]	7.4	0.8402
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	10.2	0.8335
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	13.0	0.8013
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	13.4	0.8207

Compare expression of checked genes

Lus10036625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.