Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64860 480 / 4e-165 DPE1 disproportionating enzyme (.1) AT2G21940 271 / 4e-87 ATSK1 shikimate kinase 1 (.1.2.3.4.5) AT4G39540 268 / 3e-86 ATSK2 shikimate kinase 2 (.1.2.3) AT3G26900 119 / 3e-30 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) AT2G40840 93 / 2e-19 DPE2 disproportionating enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035845 [exp] 560 / 0 AT5G64860 811 / 0.0 disproportionating enzyme (.1) Lus10035843 [exp] 387 / 2e-132 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5) Lus10035171 [exp] 96 / 7e-22 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10031010 [exp] 91 / 5e-19 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1) Lus10035408 [exp] 74 / 1e-13 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1) Lus10032000 [exp] 57 / 1e-08 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10030990 [exp] 47 / 2e-05 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081400 [exp] 504 / 1e-174 AT5G64860 849 / 0.0 disproportionating enzyme (.1) Potri.007G081000 [exp] 292 / 2e-95 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5) Potri.005G084600 [exp] 290 / 8e-95 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.002G061100 [exp] 224 / 7e-70 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5) Potri.017G062800 [exp] 130 / 7e-34 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Potri.006G031700 [exp] 94 / 7e-20 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1) Potri.016G028900 [exp] 94 / 9e-20 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1) Potri.019G048200 [exp] 44 / 8e-05 AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G096600 [exp] 45 / 0.0001 AT2G35500 447 / 5e-157 shikimate kinase-like 2, shikimate kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02446 [flax] [poplar] Glyco_hydro_77 4-alpha-glucanotransferase CL0023 [flax] [poplar] P-loop_NTPase PF01202 [flax] [poplar] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Lus10036626 pacid=23174585 polypeptide=Lus10036626 locus=Lus10036626.g ID=Lus10036626.BGIv1.0 annot-version=v1.0 ATGCTGGAGGCTGGAGCCACTAACTGTTACCCTTATTTTGTTCCTCGTGACCAGATAGATATATTCATTGCACGACAATTCTTATTCCAGAGGCAGTGGC AGAAGCTTCGTGCATATGCTCAGGGGAAGGGAATTAGCATAATGGGAGACATGCCCATCTATGTAGGATACCATAGTGCTGATGTTTGGGCCAACAAAAA GCACTTTTTACTGGGCAAGAGTGGGTTTCCTCTGCTGGTTAGTGGAGTTCCACCAGATGCCTTCAGTGAAACTGGTCAATTGTGGGGCAGCCCTTTATAT GATTGGAAATCTATGGAAGAAGATGGGTTTTCATGGTGGGTAAGACGTATACGAAGGGCTCAAGATCTATACGATGAATTCAGAATTGATCATTTTAGAG GTTTTGCTGGATACTGGGCTGTTTCTTCTGAGGCTGAGATAGCAACGATTGGAAACTGGAAGGCCGGACCTGGAAAGTCCTTGTTTGATGTCATTTTTAG AGAAGTTGGTACCATCAAGATTATAGCTGAAGATCTGGGAGTAATTACTGAGGACGTAGTTGAGCTCAGGAGATCCATTGGTGCTCCTGGAATGGCTGTG CTCCAGTTTGCTTTTGGAAGTGATGCAGACAACCCTCATTTGCCCCATAACCACGAGACAAATCAAGTTGTGTATACCGGAACTCATGATAATGATACGA TTCAAGGGTGGTGGGATGGTTTGAAGCAAGAAGAGAAGTTGAATGTGTTGAGGTACACTTCAATCACCGAGGAAGATGACATCCCATGGGCACTAATCCG TACTGCACTGTCGTCAGTTGCTCGAACAGCAATCATACCGATGCAAGATATTCTTGGGCTAGGGAATTCCGCTAGGATGAACATTCCTGCAACCCAGACC AAGTCACAAGAGGTTGAACCTTACTTGAGCGGACGCTGTATTTATCTGGTTGGAATGATGGGTTCTGGGAAAACCACTGTGGGCAAAGTTCTTGCAGATG TACTTCGGTATTCATTCCGTGACAGTGATGCATTGATCGAAAAGTCTGTTGATGGGATATCAGTGGCTGAAATATTTAACCTCTACGGAGAATGTTTCTT CAGAGATAAAGAGACAGAGGCATTGAAGGAATTATCTCTAAGCAACCGACTAGTTGTTTCTACTGGTGGAGGTGCAGTTATACGGCCCATCAATTGGAAA TATATGCACAAGGGAATTAGTGTCTGGTTGGATGTGCCCTTGGAAGCATTGGCACAAAGGATTGCTGCAGTGGGGACTGGTTCTCGACCCCTTCTCCATG AAGAATCTGGCGATGCATACACAAAGGCTTTGAGACGTCTGTCTACCCTTTTTGAAGAGAGAAGTGCAGCTTACGAGAATGCTACAGTCAGGGTCTCCTT GGAAAATATTGCTGCTAAGCTTGGCCATAGGGATGTGTTGGGTGTAACTCCAGCAACAATTGCGATTGAGGTCTTGCTTTGTCTCTCAGTTGATGATGCA TCTAACCATACAAGGCTTTCTCGTGTAACTCACTTTAAATCTGTACCACGCATTTACTGTATGTTTGCAGGCTCTGGATAA
AA sequence Show only first row Show all	>Lus10036626 pacid=23174585 polypeptide=Lus10036626 locus=Lus10036626.g ID=Lus10036626.BGIv1.0 annot-version=v1.0 MLEAGATNCYPYFVPRDQIDIFIARQFLFQRQWQKLRAYAQGKGISIMGDMPIYVGYHSADVWANKKHFLLGKSGFPLLVSGVPPDAFSETGQLWGSPLY DWKSMEEDGFSWWVRRIRRAQDLYDEFRIDHFRGFAGYWAVSSEAEIATIGNWKAGPGKSLFDVIFREVGTIKIIAEDLGVITEDVVELRRSIGAPGMAV LQFAFGSDADNPHLPHNHETNQVVYTGTHDNDTIQGWWDGLKQEEKLNVLRYTSITEEDDIPWALIRTALSSVARTAIIPMQDILGLGNSARMNIPATQT KSQEVEPYLSGRCIYLVGMMGSGKTTVGKVLADVLRYSFRDSDALIEKSVDGISVAEIFNLYGECFFRDKETEALKELSLSNRLVVSTGGGAVIRPINWK YMHKGISVWLDVPLEALAQRIAAVGTGSRPLLHEESGDAYTKALRRLSTLFEERSAAYENATVRVSLENIAAKLGHRDVLGVTPATIAIEVLLCLSVDDA SNHTRLSRVTHFKSVPRIYCMFAGSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036626 [exp]	0	1
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	1.0	0.9566
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	7.2	0.9517
AT1G68585			unknown protein		Lus10035025 [exp]	7.7	0.9418
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	10.7	0.9323
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	12.7	0.9448
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	16.8	0.8990
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	17.1	0.9302
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	18.0	0.9238
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	18.1	0.9283
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	18.5	0.9279

Compare expression of checked genes

Lus10036626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.