Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 706 / 0 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT2G46660 475 / 2e-163 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 471 / 6e-162 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G13710 460 / 7e-158 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 448 / 8e-153 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G01190 444 / 2e-151 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G40890 255 / 2e-78 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G07990 238 / 1e-71 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 232 / 2e-69 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 226 / 3e-67 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035844 [exp] 1002 / 0 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 782 / 0 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 458 / 8e-157 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10015788 [exp] 448 / 5e-154 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10017334 [exp] 448 / 7e-153 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10030216 [exp] 446 / 5e-152 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10001670 [exp] 393 / 2e-131 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10006821 [exp] 294 / 8e-97 AT5G09970 259 / 6e-84 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10019457 [exp] 253 / 1e-77 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084500 [exp] 798 / 0 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 769 / 0 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 730 / 0 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 728 / 0 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 456 / 4e-156 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 451 / 8e-154 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 449 / 2e-153 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 445 / 2e-151 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G054800 [exp] 439 / 5e-149 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 435 / 5e-148 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036627 pacid=23174528 polypeptide=Lus10036627 locus=Lus10036627.g ID=Lus10036627.BGIv1.0 annot-version=v1.0 ATGGACAACATTGATCACCACCATTTCCTCATGAATTCCAAAGACACCTCCTGGTACTTCTTCGCGCTTCCAGCTTTTCTGGGTTCCCAAACTTTCCTAG ACTCCTACGTCCTCTTCTCTCTCCTCGCCGCTTTCCTCTCCATCGGCCTCCTCACTTGGGCTTTCTCCACCGGCGGCACCGCTTGGAAGCACGGCCGCAA CTCTCGCGGCCTGGTCCCCATCCCTGGCCCACGCGGCTTCCCAATATTCGGCAGCCTCTTCTCCCTCAGCCGCGGCTTGGCCCACCGGACCTTGGCTTCC ATGGCTTGGTCCCGAGACAACACCCAGCTCATGGCTTTCAGCCTCGGCGCGTCAACTCCCCTTGTCGTGGCTTCAGACCCGCACACTGCGAAGGAGATCC TCACCGCCCCTGGCTTCGCTGACCGTCCCATCAAACAGTCGGCTAAGAGCCTCATGTTCAGCCGAGCCATCGGGTTTGCTCCCAACGGGACCTACTGGCG TCTCCTCAGGAGGATCGCTTCGTCCCACCTCTTCTCTCCTCGTCGTATATCGGCTCACGAGGGTATAAGGCAGGTGGAGTGCACAGCCATGCTGCGGAGT GTGGCCCGTGAGATGGAGGTCAAGGGGCGTGTGGAGCTCCGTTCTCACCTCCAGCTGGCTTCGCTTAACAATATCATGGGTAGCGTGTTCGGGAAGCGAT ACGACGCCGCTGAGAATTGGGAGGAGCTGGAACGACTCAAGGAGATGGTTCGGGAAGGGTTCGAGCTATTGGGGGCGTTTAACTGGTCGGATTATCTGCC GTGGCTGAGCATGTTTTACGACCCGTATCGTATTAACGAGCGTTGTTTGAAACTCGTCCCCCGAGTCAAGCAACTCGTCAAGGGTATCATTGAAGAGCAT CGCTGCCGCATGGTCAGTGGGCCCACCCCCGACTCCGGCACGGATATCGGTGATTTTGTTGACGTGTTACTCTCCTTGGACGGTGAGGAGAAGCTGCAGG AGGATGACATGGTCGCTGTCCTTTGGGAAATGATTTTCAGAGGAACCGACACGACTGCCCTGTTGACCGAGTGGGTCATGGCTGAATTGGTACTCCACCC TGAAATCCAGCACAAGCTTCGAGTTGAGCTGCAGAACATAACGTCTGAGGCGCCCTTGATAGAGGCTGACGTGGCTAAGTCCCCTTACCTGCAGGCCGTC GTGAAAGAAACCCTGCGGGTCCATCCACCTGGCCCACTTCTATCTTGGGCCAGGCTTTCCACGTCGGACGTCCAGCTTAACAACGGCATGCTGATACCTG CCAACACGACCGCCATGGTGAACATGTGGGCCATCACCCACGACCCGAACGTATGGACTGACCCGCTGGAGTTCCGTCCCGAGAGGTTCACGGAGGAAGG AGGTGACGTGGATGTCCGTGGAAGCGACCTGAGGCTTGCTCCGTTCGGTGCCGGGAGGAGAGTCTGCCCGGGGAAGAATCTGGGGATGGTGACGGTGGGG CTGTGGGTGGCGAAGCTGGTGACTGGATTTGAGTGGTCGGAGGATGGGGCCCACCCTGTGGATCTTGGTGAAGTGTTGAAGCTGTCTTGTGAGATGAAGC ATCCTTTGCATGCTGTAGCGGTGCCGCTGGAATGA
AA sequence Show only first row Show all	>Lus10036627 pacid=23174528 polypeptide=Lus10036627 locus=Lus10036627.g ID=Lus10036627.BGIv1.0 annot-version=v1.0 MDNIDHHHFLMNSKDTSWYFFALPAFLGSQTFLDSYVLFSLLAAFLSIGLLTWAFSTGGTAWKHGRNSRGLVPIPGPRGFPIFGSLFSLSRGLAHRTLAS MAWSRDNTQLMAFSLGASTPLVVASDPHTAKEILTAPGFADRPIKQSAKSLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRISAHEGIRQVECTAMLRS VAREMEVKGRVELRSHLQLASLNNIMGSVFGKRYDAAENWEELERLKEMVREGFELLGAFNWSDYLPWLSMFYDPYRINERCLKLVPRVKQLVKGIIEEH RCRMVSGPTPDSGTDIGDFVDVLLSLDGEEKLQEDDMVAVLWEMIFRGTDTTALLTEWVMAELVLHPEIQHKLRVELQNITSEAPLIEADVAKSPYLQAV VKETLRVHPPGPLLSWARLSTSDVQLNNGMLIPANTTAMVNMWAITHDPNVWTDPLEFRPERFTEEGGDVDVRGSDLRLAPFGAGRRVCPGKNLGMVTVG LWVAKLVTGFEWSEDGAHPVDLGEVLKLSCEMKHPLHAVAVPLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	0	1
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	5.7	0.7690
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10021331 [exp]	7.9	0.6293
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	19.4	0.6800
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	19.7	0.6187
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	24.5	0.6956
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	29.7	0.6573
AT1G16520			unknown protein		Lus10031771 [exp]	30.7	0.6788
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	46.4	0.6240
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	49.1	0.6308
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011567 [exp]	50.2	0.6461

Compare expression of checked genes

Lus10036627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.