Plant FIBer expression Database

Lus10036628 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64860 129 / 9e-36 DPE1 disproportionating enzyme (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035845
[exp]
197 / 8e-61 AT5G64860 811 / 0.0 disproportionating enzyme (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G081400
[exp]
127 / 8e-35 AT5G64860 849 / 0.0 disproportionating enzyme (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF02446 Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence
>Lus10036628 pacid=23174433 polypeptide=Lus10036628 locus=Lus10036628.g ID=Lus10036628.BGIv1.0 annot-version=v1.0
ATGGCGAAGCTCCACTCTTTCTCGCTCTGTCATTCTCTATCTTCTCCCATCTCCTCCTCTCGTTTCTCCTTCGCCCCCGTATCTCATCAGTTCAACACCA
TGATGTGCCGTCGCAGTTCACCCGCCCCAGCATCCGTTGCCATGACTTCTGATACCAAATTCGCCTCTGTCGCCGTCGCCGCTGGCGCCGTCGGCGAGAG
CTCCCCCGACGAATACGGCGACTGGCTACCGAAGCGTGATCCGGAGACTCGTAGAAGAGCTGGTGTTTTGCTTCATCCTACTTCCTTGAGAGGTCCTCAA
GGTATTGGTGATTTTGGCCAGGAAGCGTTTCGGTTCGTCGATTGGCTGAGTGACACCGGTTGTTCCGTTTGGCAGGTTCTCCCTCTAGTTCCACCCGATG
ATGAGGGATCACCGTACTCGGGCAAGGTGATTGTTCTACTGATGAGCTAA
AA sequence
>Lus10036628 pacid=23174433 polypeptide=Lus10036628 locus=Lus10036628.g ID=Lus10036628.BGIv1.0 annot-version=v1.0
MAKLHSFSLCHSLSSPISSSRFSFAPVSHQFNTMMCRRSSPAPASVAMTSDTKFASVAVAAGAVGESSPDEYGDWLPKRDPETRRRAGVLLHPTSLRGPQ
GIGDFGQEAFRFVDWLSDTGCSVWQVLPLVPPDDEGSPYSGKVIVLLMS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64860 DPE1 disproportionating enzyme (.1) Lus10036628
[exp]
0 1
AT2G43180 Phosphoenolpyruvate carboxylas... Lus10026743
[exp]
2.2 0.8314
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Lus10013044
[exp]
3.9 0.8596
AT5G13260 unknown protein Lus10001801
[exp]
4.9 0.8471
AT3G27730 MER3, RCK ROCK-N-ROLLERS, ATP binding;AT... Lus10014551
[exp]
5.3 0.8330
AT3G20720 unknown protein Lus10043072
[exp]
12.7 0.8259
AT2G45900 Phosphatidylinositol N-acetygl... Lus10042850
[exp]
13.2 0.8263
AT4G18490 unknown protein Lus10034597
[exp]
14.1 0.8006
AT3G05040 HST1, HST HASTY 1, HASTY, ARM repeat sup... Lus10018994
[exp]
16.1 0.8362
AT2G21090 Pentatricopeptide repeat (PPR-... Lus10019213
[exp]
17.3 0.7949
AT5G66050 Wound-responsive family protei... Lus10041852
[exp]
18.0 0.7733

Lus10036628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.