Plant FIBer expression Database

Lus10036629 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21970 197 / 4e-64 SEP2 stress enhanced protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035846
[exp]
377 / 3e-135 AT2G21970 196 / 5e-64 stress enhanced protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G084200
[exp]
253 / 3e-86 AT2G21970 197 / 2e-64 stress enhanced protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00504 Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence
>Lus10036629 pacid=23174408 polypeptide=Lus10036629 locus=Lus10036629.g ID=Lus10036629.BGIv1.0 annot-version=v1.0
ATGGCCACAGCGACGGCGCGTGTAATCCGTTGCGAACTCCGTGCCGCGGCCAAGCGGCCGGCCGTTGCCAACACCGGAACTGGATCTCCGCTACAGCTCG
TGCCGGTGCCGCAGACGACGCCGGAGAACCAGAACAGGAAGATACTCCTGCAGCCTCGACTGTGTACTTTGAGATCATACGGAGAAGACCGGTTCGGAGT
TGTGAAGACGAAAAAGGATGCAAGTGGCCGCCGGGTCGGAGGAGGAGAATATGAGGTGTCGAGGTTCTTTGAGACTTTATCGGAATACATCGAGAGCTCC
AAGAAGAGCCAGGATTTTGAGATCATCTCAGGCCGATTCGCCATGATCGTATTCGCGGCGACGGTGGTGTCAGAGGTGGTGACGGGGAACTCGGTGCTGA
GGAAGCTGGATTTGGTGGGAATCGAGGAAGCCGGCTGCGCGTGTTTGGGAGCGGTGGTTTTTGCGGCGATTTTCGCGTGGTTCTCAAGTGCGAGGAACAG
AGTGGGGAAGATTTTGACCTTCCGATGCAACTCGTTCATCGACTCGCTCATTGACGATATCGTCGACGGCCTGTTCTACGAAACGGAACTCAGCGACTGG
TCTGATGAAATCTGA
AA sequence
>Lus10036629 pacid=23174408 polypeptide=Lus10036629 locus=Lus10036629.g ID=Lus10036629.BGIv1.0 annot-version=v1.0
MATATARVIRCELRAAAKRPAVANTGTGSPLQLVPVPQTTPENQNRKILLQPRLCTLRSYGEDRFGVVKTKKDASGRRVGGGEYEVSRFFETLSEYIESS
KKSQDFEIISGRFAMIVFAATVVSEVVTGNSVLRKLDLVGIEEAGCACLGAVVFAAIFAWFSSARNRVGKILTFRCNSFIDSLIDDIVDGLFYETELSDW
SDEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G21970 SEP2 stress enhanced protein 2 (.1) Lus10036629
[exp]
0 1
AT5G43260 chaperone protein dnaJ-related... Lus10037022
[exp]
2.2 0.8924
AT1G03495 HXXXD-type acyl-transferase fa... Lus10033754
[exp]
2.4 0.9123
AT2G27180 unknown protein Lus10008446
[exp]
3.0 0.8756
AT1G61930 Protein of unknown function, D... Lus10020047
[exp]
3.2 0.9287
AT1G61930 Protein of unknown function, D... Lus10006775
[exp]
3.5 0.8899
AT2G21970 SEP2 stress enhanced protein 2 (.1) Lus10035846
[exp]
3.5 0.9139
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10025904
[exp]
5.7 0.8676
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10019017
[exp]
7.7 0.8604
AT3G23400 FIB4 fibrillin 4, Plastid-lipid ass... Lus10011803
[exp]
8.8 0.8620
AT1G10500 ATCPISCA chloroplast-localized ISCA-lik... Lus10012683
[exp]
9.2 0.8347

Lus10036629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.