Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21990 297 / 6e-101 Protein of unknown function, DUF617 (.1) AT4G39610 297 / 1e-100 Protein of unknown function, DUF617 (.1) AT5G06990 231 / 4e-75 Protein of unknown function, DUF617 (.1) AT5G42680 184 / 6e-57 Protein of unknown function, DUF617 (.1.2) AT2G41660 166 / 4e-49 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 158 / 2e-46 Protein of unknown function, DUF617 (.1) AT5G23100 155 / 3e-45 Protein of unknown function, DUF617 (.1) AT2G37880 144 / 3e-41 Protein of unknown function, DUF617 (.1) AT1G21050 133 / 6e-37 Protein of unknown function, DUF617 (.1) AT5G65340 132 / 1e-36 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035847 [exp] 488 / 5e-175 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 174 / 2e-52 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10019166 [exp] 169 / 2e-50 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 166 / 4e-49 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 166 / 5e-49 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10008672 [exp] 162 / 7e-49 AT5G06990 162 / 5e-54 Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 166 / 8e-49 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 159 / 1e-46 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 155 / 4e-45 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084000 [exp] 298 / 2e-101 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 241 / 1e-78 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 235 / 2e-76 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 201 / 2e-63 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.014G035000 [exp] 201 / 2e-63 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.006G048800 [exp] 187 / 8e-58 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 185 / 8e-57 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 184 / 1e-56 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 183 / 4e-56 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 181 / 1e-55 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10036630 pacid=23174642 polypeptide=Lus10036630 locus=Lus10036630.g ID=Lus10036630.BGIv1.0 annot-version=v1.0 ATGGTGGGTTTGTTTGTACAATTTAGAAAGCCAAAACATCGGATCACAATCTCTCCCAAGCACACAACTCCCTGCCTACAGGGAAGGAGTCGTCGCCTAT TCTCTCCTCCTCCCCCACAACAAAATTTCATTTCCCTCAATCTGCCTTTACCGGCCGGACGACCATCTAATGGCAAGCTTCTTCTCCTCCTGCTGCCTCC ATTAATGGGTGACCAAACTACAACGACCCCTCCTCGCAGCAGCAACGTTGACAACGAAACCTCCTCCCAACAATCCCAATCTAGTCCAACTCCTCCGCCC CTCCCTGTCTCCCTCCTCCAGCCATCACCCAACAAGAAGAAGTCAAAGCCCAAGCTGATCCGTGTCTTCCGCTCCGTCTTCCGCTCCTTCCCCATCATCG CCCCTGTCTGCAAGATGCCAACTGTCCTCTCCGCTGGCTTCTCCGATGGACCCCACCACCGAGGCGGGGTCTCGGGCACCCGGATCACCGGAACCTTGTT CGGCTACCGGAAGGGCCGGGTCAGCCTCTCGATCCAGGACAACCCGAAGTGTTTGCCGTCTGCGGTGGTGGAGCTAGCGATGCAGACCAACGTCCTGCAG AAGGAGCTCGGGTCGGGCATGCTCCGAATAGCGCTGGAATGCGAGAAGCGGCCCAATGCGGCGTCGGATAATCCGAAAGAGGTGAAATTGTTGCTGGAAG AGCCGATGTGGACGATGTACTGCAACGGGAAGAAGACGGGGTACGGGGTGAAGAGGGAGGCGACGTCGGAGGATTTGCAGGTGATGGAATTGCTCAAGGC GGTGTCGATGGGGGCTGGGGTTTTGCCTGGGAATTCCGAGACGGAAGGGGCAGAAGGTGAGCTGGCGTATATGCGGGCCTACTTTGAAAGGGTCGTGGGC TCTAAAGATTCCGAGACGCTTTACATGTTGAGCCCAGAAGGCAACAGTGGGCCCGAGCTCACTATCTTTTTCGTACGGGTATGA
AA sequence Show only first row Show all	>Lus10036630 pacid=23174642 polypeptide=Lus10036630 locus=Lus10036630.g ID=Lus10036630.BGIv1.0 annot-version=v1.0 MVGLFVQFRKPKHRITISPKHTTPCLQGRSRRLFSPPPPQQNFISLNLPLPAGRPSNGKLLLLLLPPLMGDQTTTTPPRSSNVDNETSSQQSQSSPTPPP LPVSLLQPSPNKKKSKPKLIRVFRSVFRSFPIIAPVCKMPTVLSAGFSDGPHHRGGVSGTRITGTLFGYRKGRVSLSIQDNPKCLPSAVVELAMQTNVLQ KELGSGMLRIALECEKRPNAASDNPKEVKLLLEEPMWTMYCNGKKTGYGVKREATSEDLQVMELLKAVSMGAGVLPGNSETEGAEGELAYMRAYFERVVG SKDSETLYMLSPEGNSGPELTIFFVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	0	1
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	3.6	0.8523
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	4.5	0.8477
AT3G27030			unknown protein		Lus10041551 [exp]	5.0	0.8217
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	5.5	0.8468
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	10.4	0.7964
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	12.8	0.8283
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	17.0	0.7939
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	17.3	0.8121
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	18.8	0.7904
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	20.4	0.7497

Compare expression of checked genes

Lus10036630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.