Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39630 221 / 7e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035849 [exp] 462 / 5e-167 AT4G39630 225 / 3e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082500 [exp] 239 / 3e-79 AT4G39630 228 / 1e-75 unknown protein Potri.007G085100 [exp] 237 / 2e-78 AT4G39630 219 / 7e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036631 pacid=23174674 polypeptide=Lus10036631 locus=Lus10036631.g ID=Lus10036631.BGIv1.0 annot-version=v1.0 ATGCCGAAGCGGAGAGCTAAGAGGATCGTTAAGCAACAAGCTACGCCATCGGTAGAACCTGATGTATGCGGAACTGAGTTGCCGCCAGTTGAAGAAAAGC TAGCGTCATCATTTAACCATGAAGTTGAGCGTCAGATTGCAGCAATTAGAGCTATTCGTGATATGGAGATCGAACGTTCATTAACTGCTTTGCGTCTGGT ACGATCGTATTTTACCGAAGAACAACTCGACACTCTAGTTCTTCAATTTCTCAAGGAGAATCTTCCAAACTTGTCCATTGTAAAGCACGGTGAAAACGGT CACTTTGAACTGCAATGGAAAGACAAAGACGACAATTTATCTTTGACTCGAGTAGTTGGTGGAGAAGAACTACACGCTTCTCTTCTAGGTGGTTTGTCCA TGGCTTATCCTAACTGCTCTGCGATTGGATCGCTAGCTGCTCTTGAGTTACCTACAGATGCAGTGAGAGCAACTCTATTTGGAACTGATAGCATGCAGAT GAAGGACTTTATTTTGGAGGTTCCATCAGATTCTGAGATGCTTTCGTCACAAAATGGTCTTCAAACACCAGGGGCCACTAGTCAGAGACTTTCTGTGGGG ATGACACCCAAAACTCTAAGACTGCCTAAGCCTGGAGAAATGCTTCTTTCTGTTCGTGGATCACCCCTTGGTGTCTATAAAGAAGACAACATGGAAGCAA TCGGAGGTATGTGTTATTTTAAAGACAAAAAGAATCAGAAGAGGGATAACTTGAAGAGATTCCAATTTGTTTTCTTTATTAAGAAGGGAACAGTGGGCAA ATACAGCATGGATGATGGAGAATCTCAAGTTGTAGGCCGTTAG
AA sequence Show only first row Show all	>Lus10036631 pacid=23174674 polypeptide=Lus10036631 locus=Lus10036631.g ID=Lus10036631.BGIv1.0 annot-version=v1.0 MPKRRAKRIVKQQATPSVEPDVCGTELPPVEEKLASSFNHEVERQIAAIRAIRDMEIERSLTALRLVRSYFTEEQLDTLVLQFLKENLPNLSIVKHGENG HFELQWKDKDDNLSLTRVVGGEELHASLLGGLSMAYPNCSAIGSLAALELPTDAVRATLFGTDSMQMKDFILEVPSDSEMLSSQNGLQTPGATSQRLSVG MTPKTLRLPKPGEMLLSVRGSPLGVYKEDNMEAIGGMCYFKDKKNQKRDNLKRFQFVFFIKKGTVGKYSMDDGESQVVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39630			unknown protein		Lus10036631 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10021246 [exp]	3.3	0.7592
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	6.0	0.6603
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	12.2	0.7336
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	14.0	0.6978
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	17.3	0.6485
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016976 [exp]	17.7	0.7036
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	20.1	0.7088
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	38.0	0.6465
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10012682 [exp]	39.2	0.6214
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	39.4	0.6847

Compare expression of checked genes

Lus10036631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.