Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30280 116 / 2e-31 RDM4, DMS4 DEFECTIVE IN MERISTEM SILENCING 4, RNA-directed DNA methylation 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035851 [exp] 299 / 5e-103 AT2G30280 189 / 6e-58 DEFECTIVE IN MERISTEM SILENCING 4, RNA-directed DNA methylation 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126500 [exp] 116 / 2e-31 AT2G30280 199 / 3e-61 DEFECTIVE IN MERISTEM SILENCING 4, RNA-directed DNA methylation 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036634 pacid=23174533 polypeptide=Lus10036634 locus=Lus10036634.g ID=Lus10036634.BGIv1.0 annot-version=v1.0 ATGGAAACCGTCGGCGAGAGCTCTTCCATTTCTCCGGTTTCTACCAGCGGAGACAAGCCGGTCGTTGTTAGGGTTAAGCGCAAGTTGTGCCAGTCCGTAG TCGACGCTTTTTTCGATGGAGCAGCTCGAGAAATAGCAAAAAATGCTCGCTTCCGTCAAATTTGGAGCAGCCGCAAGGAAAAAGAAGATGGACTGCATGA TATGTGTAATTTCTATGATGTTGTTCGGCTTGATGCCGAAGAAGTATCCCGTGAGGCGAAACAGAAAGAAGTTTTACCGATGGCCGATCAGAAGCTTCTT TCTAGCTATTTGCCTTTCTTAAGAGAGTTAATCCCAAATGCTGCTGAGGAAATTGAAGCTGAAATCGGTACTTCGACCTCCCAAGAAGCAGATGATTTTG TGTATGACTATTATACTGTGGGGGACAGCATGGATGTTGTACACGAAGATATGTCATTCTCGTTGCCACTGGTGCAAGTTGAGGAGGATGATTTTTATGA TGGGCCAGATGACGAGTCTGAATATGGAAGTGAAGATTCAAATGGTATTGTGACTGCTATTCTTTAA
AA sequence Show only first row Show all	>Lus10036634 pacid=23174533 polypeptide=Lus10036634 locus=Lus10036634.g ID=Lus10036634.BGIv1.0 annot-version=v1.0 METVGESSSISPVSTSGDKPVVVRVKRKLCQSVVDAFFDGAAREIAKNARFRQIWSSRKEKEDGLHDMCNFYDVVRLDAEEVSREAKQKEVLPMADQKLL SSYLPFLRELIPNAAEEIEAEIGTSTSQEADDFVYDYYTVGDSMDVVHEDMSFSLPLVQVEEDDFYDGPDDESEYGSEDSNGIVTAIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10036634 [exp]	0	1
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10000361 [exp]	12.9	0.6351
AT3G04550			unknown protein		Lus10032342 [exp]	30.2	0.6440
					Lus10025813 [exp]	220.4	0.6292

Compare expression of checked genes

Lus10036634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.