Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64010 124 / 6e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035852 [exp] 248 / 5e-84 AT5G64010 168 / 3e-51 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064951 [exp] 177 / 2e-56 AT5G64010 197 / 3e-63 unknown protein Potri.005G064800 [exp] 177 / 2e-56 AT5G64010 197 / 3e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036635 pacid=23174688 polypeptide=Lus10036635 locus=Lus10036635.g ID=Lus10036635.BGIv1.0 annot-version=v1.0 ATGGCGTTTGAAGAGTTCGAATCCATTTTTGGTGAACCGAAAGCCGGATGGGCCAAAAACTCAGAGCTCGGCGGTTCTGCGCCTCTCCGGAGATTCTTGA TGCATGTTTTTGCTCCAGACTATTACCACCTCAAGATTCAAGTGACTGATTACAACTCCTTTACCTTTGAAGCCGTCAAGTCCCTGTCGCAGCTCGAAGA CATGGCCCTTTGCCTGAATGGTGCTTCTGTCTTTTCACTTGCTTGGCAGAGAGACAGCATTGGAATTTGTGGCTCATGGTCTGAGTTTGTGGACTATCTC ATATCTTCCCTGAAAGGAGAAGATGTAAAGCTTGTCCTGGAGAAGCAATCGGGTAGCAATGGTGTTGTATCTGCACGATTAGTTTGTCAGAAATCGAAAG GAATGCCTTTAATCTCCATTTCTCTCAGAAGAGGTTTGGACTCTGATGTGAATGATGCCTTTAATTTCCATTCAAGTGTTCACCGAAGATAA
AA sequence Show only first row Show all	>Lus10036635 pacid=23174688 polypeptide=Lus10036635 locus=Lus10036635.g ID=Lus10036635.BGIv1.0 annot-version=v1.0 MAFEEFESIFGEPKAGWAKNSELGGSAPLRRFLMHVFAPDYYHLKIQVTDYNSFTFEAVKSLSQLEDMALCLNGASVFSLAWQRDSIGICGSWSEFVDYL ISSLKGEDVKLVLEKQSGSNGVVSARLVCQKSKGMPLISISLRRGLDSDVNDAFNFHSSVHRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64010			unknown protein		Lus10036635 [exp]	0	1
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	6.9	0.8207
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	8.1	0.8400
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	9.5	0.8180
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	9.7	0.8278
AT1G54680			unknown protein		Lus10018965 [exp]	10.6	0.8412
AT3G17930			unknown protein		Lus10042280 [exp]	10.8	0.8427
AT1G54680			unknown protein		Lus10033821 [exp]	15.4	0.8336
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	15.9	0.8211
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	17.3	0.8176
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	17.8	0.8217

Compare expression of checked genes

Lus10036635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.