Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64940 1041 / 0 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 518 / 4e-175 Protein kinase superfamily protein (.1.2.3) AT1G79600 250 / 2e-72 Protein kinase superfamily protein (.1) AT5G24970 246 / 2e-70 Protein kinase superfamily protein (.1.2) AT4G31390 228 / 1e-64 Protein kinase superfamily protein (.1.2) AT1G71810 226 / 1e-63 Protein kinase superfamily protein (.1) AT3G24190 206 / 3e-56 Protein kinase superfamily protein (.1) AT2G39190 196 / 1e-52 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24810 184 / 2e-48 ABC1 family protein (.1.2) AT1G65950 171 / 3e-45 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035853 [exp] 1180 / 0 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 526 / 1e-177 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 523 / 1e-171 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035701 [exp] 254 / 2e-73 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 238 / 4e-68 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 207 / 7e-57 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 198 / 9e-54 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 197 / 5e-53 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 193 / 1e-51 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083200 [exp] 1091 / 0 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 1075 / 0 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 513 / 1e-172 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 244 / 1e-70 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 234 / 8e-67 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 227 / 6e-64 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 217 / 7e-61 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 218 / 3e-60 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 202 / 1e-54 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G003400 [exp] 172 / 2e-44 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10036636 pacid=23174590 polypeptide=Lus10036636 locus=Lus10036636.g ID=Lus10036636.BGIv1.0 annot-version=v1.0 ATGGCCGTTTCGACGACAGCTGCTGCTGCTTCTTGTACTTGTTCTTCCGCTTGTTCACTCTCTATCCCAGACATCAAATTTCTCTCGCTGACTGTAGAAA AGCGCAGCGTTAGGCTCTCCGAACGGTCTTTCGGTGTGAATTCGTTTTCTCGTGGGAGTATTCAGCTTAGCTACAGATGTATCCGGCTTCAGAATCGAGC TCGAGCTGCCAAGGGAGAGAGTACGGTGATCGAGGAAAGGGAAAGTAAGCTGTTGAGAGAATTGAATGGAAATGGCGCTGCTGCTAGCAATGGAAGTAAG TATGGGGTTAATGGATCGTCGAGTAATGGGCGTTTGGGTGTGGTTAGTAGTGAGATGGATGGTGGAAGTAACGGGAGCTTGACGAAGTACGCTAACGGGA ATGGAAGTGCTTCTGCAGCTGAGCAAGCGGCTGAGGCTGTGGAAGATGGGAGGAAGAAGCGGATAGAGGAGGTTGGGAAAGAAGATGCCTGGTTTAAGCG AGCTGGCAACGGGCAGGTTGAGGTTTCTGTTGTACCTGGGGGCCGCTGGAATAGATTCAAAACCTATTCCACCATCCAAAGAACTCTTGAAATTTGGGGA AATGTCTTTGCTTTCATCTTCAAGGTTTGGTTGAACAATCAGAAATTCGCTTACCGAGGGGGGATGACAGAGGAGAAGAAAATTGTGAGGAGGAAGGCAC TTGCTAAGTGGCTAAAGGAAAGTATTCTGAGACTTGGTCCCACATTCATCAAAATAGGCCAGCAGTTCTCCACAAGAGTTGACATCCTTGCTCAAGAATA TGTTGATCAATTGTCGGAACTTCAGGATCAAGTTCCCCCTTTCCCATCTGAGACTGCTGTTTCTATAGTCGAAGAAGAGCTTGGAGCACCGGTGGAGGAT ATCTTTGATAGGTTTGATTATGAACCAATTGCCGCTGCAAGTCTTGGTCAGGTTCACCGTGCGAGACTTAAAGGGCAGGAAGTTGTTATCAAAGTACAAC GGCCCGGTCTAAAAGATCTTTTCGATATTGATCTCAAGAATTTGAGGGTAATAGCAGAATATCTTCAGAAGGTCGACCCAAAGTCAGATGGAGCAAAGAG AGATTGGGTTGCAATTTACGACGAGTGTGCAAATGTATTGTATCAGGAGATTGATTACACCAAAGAAGCTGCCAATGCAGAGCTATTTGCTAGTAATTTC AAGGATATGTCGTACGTTAAAGTACCGAACATTGTTTGGGAATACACAACGCCTCAGGTCCTAACGATGGAGTATGTCCCTGGGATCAAAATAAATAAAG TAAAGGCTTTAGATCAGCTGGGTCTTGATCGCAAGAGATTAGGCCGATATGCTGTTGAATCTTACTTGGAGCAAATTCTTTCGCATGGATTTTTTCATGC TGATCCGCACCCAGGAAATATTGCTGTTGATGATGTCGATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGAAGTATCAGTCCAAACATCAGA GAAGGGTTGCTAGAAGTATTCTATGGAGTTTACGAGAAGGATTCCGACAAGGTTCTTCAAGCGATGATCCAAATGGGTGTTCTTGTTCCTACTGGAGATA TGACAGCTGTCAGACGTACTGCACAATTTTTCCTTAATAGTTTCGAAGAGCGTCTTGCTGCACAACGACGGGAGAGGGAAATTGCAAACGCAGAACTTGG GTTTAAAAAACCTTTGTCGAAGGAGGAAAAACTTGAAAAAAAGAAGCAGCGGTTGGCTGCTATAGGGGAAGATCTATTATCCATAGCTGGAGATCAACCT TTTCGATTCCCTGCCACATTTACATTTGTTGTAAGAGCATTTTCAGTCTTAGATGGCATTGGAAAAGGCCTTGACCCTCGGTTCGACATTACAGAAATTG CCAAACCGTATGCATTAGAACTGTTGAAGTTCCGGGAAGCAGGAGTTGAAGTAGTGGTGAAGGACCTGAGAAATAGATGGGATAGGCAGTCCCGTGCATT CTACAACTTGTTTAGACAGGCTGATAGAGTTGAAAAGCTTGCAGAAACTATACAAAGATTGGAGCAAGGTGATTTGAAGCTTAGAGTTCGAACCCTGGAG GCTGAGAGAGCTTTCCAGCGTGTTTCTGCTGTTCAAGCTACAGTAGGAAGTGTACCAGCTACGATGGCATATGCAGTATGTGCAATATTTACGTTGCAAG TAGTGATAGGAATTGTAAAGGTGAAGAAGTTAGACCAACGAGAAAGATTAATAACAGGCACTGCTTAA
AA sequence Show only first row Show all	>Lus10036636 pacid=23174590 polypeptide=Lus10036636 locus=Lus10036636.g ID=Lus10036636.BGIv1.0 annot-version=v1.0 MAVSTTAAAASCTCSSACSLSIPDIKFLSLTVEKRSVRLSERSFGVNSFSRGSIQLSYRCIRLQNRARAAKGESTVIEERESKLLRELNGNGAAASNGSK YGVNGSSSNGRLGVVSSEMDGGSNGSLTKYANGNGSASAAEQAAEAVEDGRKKRIEEVGKEDAWFKRAGNGQVEVSVVPGGRWNRFKTYSTIQRTLEIWG NVFAFIFKVWLNNQKFAYRGGMTEEKKIVRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELGAPVED IFDRFDYEPIAAASLGQVHRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKVDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAELFASNF KDMSYVKVPNIVWEYTTPQVLTMEYVPGIKINKVKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVDGGRLIFYDFGMMGSISPNIR EGLLEVFYGVYEKDSDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREIANAELGFKKPLSKEEKLEKKKQRLAAIGEDLLSIAGDQP FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVVVKDLRNRWDRQSRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLE AERAFQRVSAVQATVGSVPATMAYAVCAIFTLQVVIGIVKVKKLDQRERLITGTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	0	1
AT5G08720			unknown protein		Lus10025701 [exp]	1.4	0.9658
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	1.4	0.9647
AT5G08720			unknown protein		Lus10035962 [exp]	2.4	0.9609
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	3.2	0.9459
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	3.7	0.9347
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	4.0	0.9345
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	4.0	0.9557
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10019820 [exp]	4.1	0.9225
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	5.2	0.9342
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	5.3	0.9260

Compare expression of checked genes

Lus10036636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.