Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48030 489 / 1e-170 GFA2 gametophytic factor 2 (.1) AT1G28210 253 / 4e-79 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 222 / 1e-66 DNAJ heat shock family protein (.1) AT4G39960 210 / 4e-62 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 199 / 9e-58 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 189 / 1e-53 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G22060 135 / 7e-35 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 128 / 2e-32 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 119 / 9e-30 ATERDJ3B DNAJ heat shock family protein (.1) AT5G25530 86 / 3e-18 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035855 [exp] 820 / 0 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 677 / 0 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 645 / 0 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10020949 [exp] 226 / 4e-69 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10023148 [exp] 218 / 3e-65 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 218 / 4e-65 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 202 / 1e-58 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 201 / 3e-58 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 191 / 4e-55 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 593 / 0 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 580 / 0 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 265 / 9e-83 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 222 / 8e-67 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 218 / 3e-65 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 197 / 5e-57 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 167 / 2e-45 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.009G015700 [exp] 150 / 4e-40 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 144 / 5e-38 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 138 / 8e-36 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036638 pacid=23174690 polypeptide=Lus10036638 locus=Lus10036638.g ID=Lus10036638.BGIv1.0 annot-version=v1.0 ATGAAAGACTACGTTTGGTCCAACCAAAATAATCGGACCGTTTCTATTTGTGGACGTCATTCAGTCCCAGCTCCCAGCCACCTGCAAACACCATTCTTCT TTAGGTCATCAGCGGCCGCAGGGTTAAGCTCGAAACTTCATCCGAGGTTGGAGAAAGATTCAGCCTTCGTACTACTACCACTACCACTATCTGCAATCAC TCGAGAGCAAGTTAACGACATAATGGTTAGTTACCGGCTCGTGGGTTCCCTTGCACGCCGCACTCTCCATTCTCTGCTTCCTCAAAATTGTCCTGATTAT GTCTATAGGACTTTGATCAATGGGAGCTATAGGAGATTAACTACAGCTTGTGGATGTACTCGAGCTAGGGTCTGCAATTCTTTTCCTCGGAATACAGTTG AGCATAAAGATTGGTCGTCATTCGGAACCCCTAAAACTAATTTTCGTACAGTGAGGTTAATCCATGGCACAGCTTACTCCGCAAAAGATTACTACGACAC ACTTGGTGTCAGCAAGAATGCTACTCAAACAGACATTAAGAAAGCATATTATGAGCTAGCAAAGAAATTGCATCCAGATAGTAACAAAGATGACCCTGAA GCTCAACAAAAGTTCCAAGAAGTTTCTAAGGCTTATGAGGTTTTGAAAGATGAAGAAAAGCGTGCACAATATGACGAGGTGGGACATGAGACTTTCGAAC AAGGTGGATCTGGTTTCCAACCCGGTGGGATGGGATTTGATAATCCATTCGGGGACATCAGGATGGAGGATATCTTCGGCAGTGTGTTTAAGCAGAGGCT TGGTGGCCAAGATGTCAAGGTTGCAATTGAACTATCCTTTATGGAAGCTGTTCGGGGATGCACAAAAAATATCACATATCAAACTGACGTTCCTTGTGAA ACTTGTCGTGGTGAAGGTGTCCCCCCTGGCGTGAAACCTCAAATATGTAAACGATGCAAAGGGTCTGGCATGGTTTTCTCGCAAAAAGGTTTTTTCAGTG TTCAGCACACCTGCAGTCAATGTGGCGGTGTAGGACAAACTGTATCGAGCTTTTGCAAATCGTGTCAGGGACGCAAGGTACTAAGAGGGTCAAAATCTAT CAAATTGGATTTCGTGCCTGGAGTTGATGATAATGAAACAATCAAGGTTCCTAGGAGTGGTGGAGCAGACCCCGACAGAAACCAACCTGGTGATCTTCTT GTCACGATAAAGGTGCGTGAGGATCCTGTCTTCCGCAGAGAGGGTAGTAACATACACGTAGATGCTGTTTTGAGCGTTACTCAGGCAATTCTTGGGGGGA CGATTCAGGTCCCGACACTTACTGGAGATGTTGTGCTTAAGGTTCGTGCCGGTACCCAACCTGGTCAGAAAGTGGTGCTGAAGAAGAAAGGAGTTAAAGG ACGTAACTCGTATACTTATGGCGATCAGTTTGTGCACTTCAATGTCAGCCTCCCAACGAGTTTAACCCCAAGGCAACGTGAATTGCTGGAGGAGTTCAGC AAAGAACAGGTTGAATGCGAGAAGCGTGCCGCTGGGGCATCCGGCTAA
AA sequence Show only first row Show all	>Lus10036638 pacid=23174690 polypeptide=Lus10036638 locus=Lus10036638.g ID=Lus10036638.BGIv1.0 annot-version=v1.0 MKDYVWSNQNNRTVSICGRHSVPAPSHLQTPFFFRSSAAAGLSSKLHPRLEKDSAFVLLPLPLSAITREQVNDIMVSYRLVGSLARRTLHSLLPQNCPDY VYRTLINGSYRRLTTACGCTRARVCNSFPRNTVEHKDWSSFGTPKTNFRTVRLIHGTAYSAKDYYDTLGVSKNATQTDIKKAYYELAKKLHPDSNKDDPE AQQKFQEVSKAYEVLKDEEKRAQYDEVGHETFEQGGSGFQPGGMGFDNPFGDIRMEDIFGSVFKQRLGGQDVKVAIELSFMEAVRGCTKNITYQTDVPCE TCRGEGVPPGVKPQICKRCKGSGMVFSQKGFFSVQHTCSQCGGVGQTVSSFCKSCQGRKVLRGSKSIKLDFVPGVDDNETIKVPRSGGADPDRNQPGDLL VTIKVREDPVFRREGSNIHVDAVLSVTQAILGGTIQVPTLTGDVVLKVRAGTQPGQKVVLKKKGVKGRNSYTYGDQFVHFNVSLPTSLTPRQRELLEEFS KEQVECEKRAAGASG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10036638 [exp]	0	1
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	3.0	0.8792
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	6.2	0.8533
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	11.2	0.8375
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	15.0	0.8420
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	20.0	0.7958
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	21.7	0.8314
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	21.8	0.8388
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	23.7	0.8327
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	24.2	0.8272
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	24.7	0.8049

Compare expression of checked genes

Lus10036638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.