Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 293 / 3e-87 RLK1 receptor-like protein kinase 1 (.1) AT4G00340 281 / 2e-82 RLK4 receptor-like protein kinase 4 (.1) AT1G34300 275 / 7e-80 lectin protein kinase family protein (.1) AT2G19130 263 / 1e-75 S-locus lectin protein kinase family protein (.1) AT4G21380 251 / 4e-71 ARK3 receptor kinase 3 (.1) AT1G11340 251 / 7e-71 S-locus lectin protein kinase family protein (.1) AT1G11410 248 / 2e-70 S-locus lectin protein kinase family protein (.1) AT5G24080 236 / 4e-69 Protein kinase superfamily protein (.1) AT5G35370 234 / 3e-65 S-locus lectin protein kinase family protein (.1) AT5G45780 228 / 6e-65 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042940 [exp] 609 / 0 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 472 / 1e-154 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 454 / 2e-147 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 452 / 4e-147 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 446 / 3e-144 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 416 / 7e-133 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 378 / 1e-118 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10042939 [exp] 340 / 2e-112 AT1G11410 49 / 8e-07 S-locus lectin protein kinase family protein (.1) Lus10030400 [exp] 325 / 2e-102 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059900 [exp] 1019 / 0 AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) Potri.013G060000 [exp] 709 / 0 AT5G60900 400 / 3e-128 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 503 / 1e-166 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 496 / 7e-164 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 491 / 3e-162 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 491 / 4e-162 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 487 / 2e-160 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 486 / 7e-160 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 483 / 7e-159 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 483 / 1e-158 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10036639 pacid=23174535 polypeptide=Lus10036639 locus=Lus10036639.g ID=Lus10036639.BGIv1.0 annot-version=v1.0 ATGGCAAGTTTGGTGGTCTACTACTATGGACACTTCTTCATCTTCCTTTTTGTAGTGGCAACTATCACTTTCTCCATTTCCTCCTCTGCTCAGACATCTA CAACCACCAACACAGTAATCACTTTAGGTTCCACCATTATTGCAGCACATCCACCTCAATCCTCCTGGCTCTCCCCTTCCGGCGATTTCTCCTTCGGGTT TCACCCACTTCAAGAAACCCCACGACGATTTCTATTAGGCATCGTCTTCCACAAAATTCCCGAGAGAAATCTTGTTTGGTCCGCCAACCGTAACGACCCG GCTCATCTCGGCTCCACTCTCACCCTAACTCTCAATGGCCAACTTCTCCTCACCCATTCCAACGGCACTAGATTCTTTATTTTCAACGGAACCTCCCTCG CCGGATCTGCCTTGATGCAAGACGACGGAAATCTGGTCCTCCTCGCCGGCGACAACAACTCTTCAACTTCAAGCCAAGTCGTGGTATGGCAGAGCTTTGA TTCCCCGACTGACACAATCCTGCTAGGCCAAACCCTAGTCACCGGTCAGAAGCTCTTCTCCAATTCGAACGGAACGGTTGATTACTCCGTCGGGAATTAT ATGTTGGAGATTCAAATTGATGGCAACGTCGTCATGTCCGCCTACAAGTTCGCCGATCCAGGGTATTGGTACACCTTGACCGCCGGGAATCCAAATGTGA GCATGGTTTTCAACCAAACAACAGGGTTTATCTACGTCAAGGACACCAACAGCAATTCTACTCTATACCAAATAACTTCCCGAATCCCTAATCCAATTCA GGACTACTACCATCGAGCGACGATCAACGACAAGGGAAACCTCCAGCAGTTCGTTTATAACAAGAGAAACGGCACCGCATCTGGATGGACGGTGGTTTGG GAGCCGGACTTCATTGCTAGGGAGCCTTGTCTCCCGTTTAACATATGCGGAGTGTACGGATTCTGCACTTCCACGAATAACAGAAGCGTCAATTGTGAAT GCTTGCCTGGATACTCTCCCTGGGATCCGGATGTGCCTTCAAAAGGTTGTTACCCGGATATGGTGATGGATTATTGCTCCCCTAATTCTTCTTCTTCCAG CTTCACTATCGAGTCCCTCGATAATGCAGACTTCCCAAATGGGCAGTTTGCAGACATGGCAATGCTCACACCTATGAATGCTGAGCAGTGCAAGCAGGCT GTGTTGGATGATTGTTACGCAGCGGCTGGGGTTTTGGTTGAATCTGTCTGTTACAAGAAGAGAATGCCACTCTTAAACGCCAGAAGAAGCGTTCCTTCCA CCAACAACATTGTTGCGTTTCTTAGAGTGCCAAAGCAGCAGCAGCAGGTTAATAATAATGAAACAGAGGATCAGAATGGCAAGGGTGATTCTTCTTCTTC ACCTTCTAAACTTGCATTGATACTTAGCATTTTGTTGTGTACGGTAATGGCTTCACTCTTTGCAACAGTGGCCATTTATCATCACCCTTTAGCCCAACAT CATTTCCAGAGAAACCAGGAGGAAACAACCAAAAGGTGTGTAGAGATAAACTTGAAGCCATTTTCATTTCAGGAAATTCAGCAAGGAACTAACGGGTTCA GGAATAAGCTCGGGAAAGGCGCTTACGGGACTGTGTATGGTGGAGTCCTGACATTAGAAGATGATCACCAAGTTGAAGTGGCTGTGAAGCTGCTTGATCA GAATGATGAGATGGAAATAAGAGGGGAAAAGGAATTCCTCACTGAAGTTCAAGTAATTGCTTTAACCCATCACAAGAATCTGGTGGGACTGTTGGGATTC TGCAATGAGAACAAACACCGTGCGCTAGTCTACGAGTTAATGGAGAAAGGTTCGTTGGCTAGTCATCTATTTGACCAAGAGAGGAGGCCTGATTGGAATC AGAGAGCTGATATTGCAATTGGTGTAGCCAGCGGATTGGTTTATTTACACGAAGAATGCGAGACTCAAATCATTCACTGCGACATCAAGCCTCAGAATGT ACTCCTCGACCAAGATTGTATTGCCAAGATCGCTGATTTCGGGCTGGCCAAGCTTCTAATGAAGGACCAGACAAGAACAAGCACAATGGCTAGAGGAACT ATGGGGTATATGGCGCCAGAGTGGCTGAAGAATGCTCCGGTGACCACGAAAGTTGACGTGTACAGCTTTGGGGTAATGCTGCTGGAGATATTGTTCTGTA GAAAGCACATGGAGTTGCAATTTGTGGATGATGATAATGGAGAAGGTGTGATTCTGATAGATTGGGTGTTGTCTTGTGTGAAAGCTGATAAATTACAGAG GATGGTTGAGGAGGAAGATCCTGAAACTTATGATGATTTCGGGAGGTATGAAAGGATGGTCATGGTTGGATTGTGGTGTACAGTTCCTAACCCAAATAGT CGTCCAACGATGAAGAAGGTTTTAGGGTTGCTCGAAGGATTTGGCGAAATTCACACTCCGGCTCTGTTTGAAGCACACATGCTTTGA
AA sequence Show only first row Show all	>Lus10036639 pacid=23174535 polypeptide=Lus10036639 locus=Lus10036639.g ID=Lus10036639.BGIv1.0 annot-version=v1.0 MASLVVYYYGHFFIFLFVVATITFSISSSAQTSTTTNTVITLGSTIIAAHPPQSSWLSPSGDFSFGFHPLQETPRRFLLGIVFHKIPERNLVWSANRNDP AHLGSTLTLTLNGQLLLTHSNGTRFFIFNGTSLAGSALMQDDGNLVLLAGDNNSSTSSQVVVWQSFDSPTDTILLGQTLVTGQKLFSNSNGTVDYSVGNY MLEIQIDGNVVMSAYKFADPGYWYTLTAGNPNVSMVFNQTTGFIYVKDTNSNSTLYQITSRIPNPIQDYYHRATINDKGNLQQFVYNKRNGTASGWTVVW EPDFIAREPCLPFNICGVYGFCTSTNNRSVNCECLPGYSPWDPDVPSKGCYPDMVMDYCSPNSSSSSFTIESLDNADFPNGQFADMAMLTPMNAEQCKQA VLDDCYAAAGVLVESVCYKKRMPLLNARRSVPSTNNIVAFLRVPKQQQQVNNNETEDQNGKGDSSSSPSKLALILSILLCTVMASLFATVAIYHHPLAQH HFQRNQEETTKRCVEINLKPFSFQEIQQGTNGFRNKLGKGAYGTVYGGVLTLEDDHQVEVAVKLLDQNDEMEIRGEKEFLTEVQVIALTHHKNLVGLLGF CNENKHRALVYELMEKGSLASHLFDQERRPDWNQRADIAIGVASGLVYLHEECETQIIHCDIKPQNVLLDQDCIAKIADFGLAKLLMKDQTRTSTMARGT MGYMAPEWLKNAPVTTKVDVYSFGVMLLEILFCRKHMELQFVDDDNGEGVILIDWVLSCVKADKLQRMVEEEDPETYDDFGRYERMVMVGLWCTVPNPNS RPTMKKVLGLLEGFGEIHTPALFEAHML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10036639 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	4.6	0.9689
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	8.2	0.9633
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	9.6	0.9631
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	9.9	0.9582
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	11.1	0.9630
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10040373 [exp]	13.4	0.9305
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	13.4	0.9622
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	13.4	0.9613
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	14.1	0.9598
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	15.3	0.9476

Compare expression of checked genes

Lus10036639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.