Plant FIBer expression Database

Lus10036643 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48090 44 / 7e-06 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
AT3G48080 41 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042937
[exp]
197 / 2e-61 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G074700
[exp]
105 / 2e-27 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1)
Potri.015G069600
[exp]
89 / 7e-22 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.012G074600
[exp]
48 / 2e-07 AT3G48080 156 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10036643 pacid=23174485 polypeptide=Lus10036643 locus=Lus10036643.g ID=Lus10036643.BGIv1.0 annot-version=v1.0
ATGGGGAGCGTGAATCTGGTGGATAACCTGAACGTGAAAGCGGAGCTGGTGAGGAAAGCTTGCTCCCTCGCCGTCAAATCCCACAAGTCGCAGCAGCTTT
TCCAATCTGAAAAGTCCCGGGGATCGCCGGAAGTTGTTTTCAGCTTCCCTGGAAGTTGGAACCTCGGGGATTGGATCAGTAAGCCGCCGTTCGGTGAAGT
TGAGGTCGATCTTCAGCTATTCCCTTCCCTCTTGTATATCGGTCTCAAGGAACCCGGCTCCGTCAATGAAGCTTTCTTGCGGAGGGTTCCCGCCGTTTTG
GGCCCGGGGTGGCTGAACTTATTTGCGGACAACAACCCTAAATTAAGCTGA
AA sequence
>Lus10036643 pacid=23174485 polypeptide=Lus10036643 locus=Lus10036643.g ID=Lus10036643.BGIv1.0 annot-version=v1.0
MGSVNLVDNLNVKAELVRKACSLAVKSHKSQQLFQSEKSRGSPEVVFSFPGSWNLGDWISKPPFGEVEVDLQLFPSLLYIGLKEPGSVNEAFLRRVPAVL
GPGWLNLFADNNPKLS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036643
[exp]
0 1
AT1G49740 PLC-like phosphodiesterases su... Lus10012665
[exp]
12.1 0.6593
AT1G08720 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1,... Lus10004124
[exp]
18.2 0.6388
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10039024
[exp]
24.5 0.6239
AT1G43700 bZIP SUE3, AtbZIP51,... sulphate utilization efficienc... Lus10042802
[exp]
24.7 0.6432
AT1G30000 MNS3 alpha-mannosidase 3 (.1) Lus10042830
[exp]
30.5 0.6454
AT4G05150 Octicosapeptide/Phox/Bem1p fam... Lus10018412
[exp]
31.1 0.6326
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10003113
[exp]
31.9 0.6091
AT5G66880 SNRK2-3, SNRK2.... SUCROSE NONFERMENTING 1 \(SNF1... Lus10019641
[exp]
32.7 0.6283
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Lus10034701
[exp]
36.4 0.6054
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10004779
[exp]
36.9 0.6268

Lus10036643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.