Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48090 274 / 2e-87 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 271 / 4e-85 alpha/beta-Hydrolases superfamily protein (.1) AT3G52430 108 / 1e-25 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 64 / 5e-11 GENE101, SAG101 senescence-associated gene 101 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042937 [exp] 830 / 0 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039617 [exp] 124 / 9e-31 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 118 / 1e-28 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10009502 [exp] 76 / 1e-14 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 75 / 4e-14 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 72 / 3e-13 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10014518 [exp] 69 / 2e-12 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 64 / 8e-11 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 50 / 2e-06 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069600 [exp] 469 / 1e-162 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G074700 [exp] 462 / 2e-159 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074600 [exp] 176 / 1e-51 AT3G48080 156 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 126 / 2e-31 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 125 / 4e-31 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G290600 [exp] 95 / 7e-21 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 89 / 8e-19 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 76 / 2e-14 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 73 / 8e-14 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036644 pacid=23174366 polypeptide=Lus10036644 locus=Lus10036644.g ID=Lus10036644.BGIv1.0 annot-version=v1.0 ATGAGATACGACATTGTCCCCAGGATCTCGCTCACCCCTTTCTCCTCACCCACTGATAGACGACTCCTGGAAATAGCCCTCGACTTCTTCAACCCGAAAC CCGCACAAAACCCGTCTTCTGATGATGCACGGAGACTCTATGTCAACGTGATGAGGAGTTCATCCTCTGTTGCCAGCCATACTGCTTGCAAGATCATGGG GAACACAAACCTTCTGCTGGAGACCGTCTCTGGTTTCGTCGAGCTAAGCCCTTACAGGCCGTTTGGGACCTACGTTTTCGCCACTGGTAACGGGAAACTT GTCATCCTGAGGAACCCAGATGCGGTTCTGCAGGTGCTGTTTTATTCGTCTCAGTTAAATTCTCCAGGGGAAGATGCGGAGGTGGCTGCAAGGAGCCTAA AGGATCATTTGGGTTACAAAGATGAACTTAAGGAATGCTTGGAGATGCAGAGTGTTACTTACTTGGATCATGATTCTCTTGCAAATCTTCCTTTGTCCTC CGATTCTGCAACTCCTGAGAATGCTGCTGTCAATGAAGCCTTGAATGATCTTGGCCTTAGTGTAAGAGGGAGACTATGCCTCCGAGCAGCAGCGGAGTTG GAGAAGCAGAAGAGTAAGAATCAAGCAACCATAGACGGGAAGGTGAAAGACATAGAGAAAGGGATACAGAAGCTGGAGAGTTACAAGAACAAGTGTGCTC TACGGGGCAGGACTTACTATGGGGCATTCAGGCTGTCAGAGGACAAGAGCGATTTCGAGGCAAACGTGACCAGGCTCGAGCTAGCTGGTATGTGGGACGA GATCATTGAGATGTTAAAAAGATATGAACTTCCTGACGAATTTGAGGGCAACGAAGACTGGATCAAACTTGGTACTAGGTTCAGAGTCCTGACTGAGCCA TTGGACATTGCAAACTACTACAGACACTCAAAGAACGAAGACACTGGGCCTTATATGGGAAGGGGTAGGCCGAAACGGTACAAGTGTACTCAGAGATGGA AGGAACATTTGGAGAGGGTGAGTATGGAACCGCCGGATTCGTGTTTGTGGGCTGAGGTGGAGGAGCTTCTTATTGCTGCAAAAGGTCCGGTAACAGTGGA ACGTGTTAAGACATTGAAGAGGAAAGTCGAGGAGTATAAGATGCAGTCGGATGTGTATTTGGAAAATAGCATGTTTGTGAAGTTGTTGAAGATGAACAAT ATCCCTTTTCCTTGA
AA sequence Show only first row Show all	>Lus10036644 pacid=23174366 polypeptide=Lus10036644 locus=Lus10036644.g ID=Lus10036644.BGIv1.0 annot-version=v1.0 MRYDIVPRISLTPFSSPTDRRLLEIALDFFNPKPAQNPSSDDARRLYVNVMRSSSSVASHTACKIMGNTNLLLETVSGFVELSPYRPFGTYVFATGNGKL VILRNPDAVLQVLFYSSQLNSPGEDAEVAARSLKDHLGYKDELKECLEMQSVTYLDHDSLANLPLSSDSATPENAAVNEALNDLGLSVRGRLCLRAAAEL EKQKSKNQATIDGKVKDIEKGIQKLESYKNKCALRGRTYYGAFRLSEDKSDFEANVTRLELAGMWDEIIEMLKRYELPDEFEGNEDWIKLGTRFRVLTEP LDIANYYRHSKNEDTGPYMGRGRPKRYKCTQRWKEHLERVSMEPPDSCLWAEVEELLIAAKGPVTVERVKTLKRKVEEYKMQSDVYLENSMFVKLLKMNN IPFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	0	1
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	1.0	0.8928
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	3.5	0.8724
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	4.9	0.8640
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	6.0	0.8428
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	7.5	0.8391
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	7.7	0.8710
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	9.5	0.8597
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	9.8	0.8373
					Lus10035642 [exp]	10.7	0.8688
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	10.8	0.8693

Compare expression of checked genes

Lus10036644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.