Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53710 526 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042935 [exp] 863 / 0 AT1G53710 556 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Lus10042936 [exp] 382 / 3e-131 AT1G53710 206 / 1e-63 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161100 [exp] 567 / 0 AT1G53710 637 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.002G093800 [exp] 59 / 4e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10036645 pacid=23174647 polypeptide=Lus10036645 locus=Lus10036645.g ID=Lus10036645.BGIv1.0 annot-version=v1.0 ATGAAGCAATACCACAAGTTGACGGCGGTGCTGTGTGTCGTATGGATGATCACCATTCTCTACGGCGAGATGCTTGCCTTTTGGATGCCTTCTTTCTTCT CTTGTTCCTGGCCTCACCACTCTCCTTCTTCTTCCTCTTCCTCCTCGATCCGCGAAGAAGTCAGGATTGCCGTCTTAACCGATCCGCAGTTAATGGATAG AACATCACACCCAACGCTGCCCAAGTCGCTTTTGGGGACGCTGCCCAAGTCGCTTTTGGGGGTGGGACAGGTCTACACCGACATTTTCATGCGTAGAGCC TTTTTCTCTTCTGTGTTGCCATTGAAACCCAATGTCATTTTGTTTCTTGGTGATTATTTTGATGGTGGCCCGGACTTGTCTGATGCAGAATGGCAGGATT CTTTACATCGTTTGAAGCATGTCTTTGATTTGGATGCCAAGTCAAGAGATTCGAATATCCCTGTTTTCTTCATCCCTGGAAACCATGATGTTGGCTACTC AAGCATCAATACCCATAAGCCAGAGGTCGTTGGGCGCTACGAGAAAGAATTTGGAAATAGAAACTTTTGGTTTGCGATTGGTAAAATGGAGTTCATTGTT GTGGATGCTCAAACTCTGGATGGGAATCCCCAGTCAGAAATAACTTCCACTGCCTGGGAATTCGTGAAGAATGTCTCCGAAGGCAATGACTTGATGCCAA AGATTTTATTGACCCATATTCCATTATACCGTCCGGATAATACACATTGTGGGCCGCTACGAAACTCTCCAATAATTAACCAGCGAATCGTGCGTTCTCG TGCTCAAGAGATATGGTACCAAAACTATCTCACTGAGGAATCCTCGAACAAATTGCTAGACTCCACCAAACCTGTACTTGTTTTGTCAGGACATGATCAT GATCAGTGTACAGTACTTCATGATTCAAAATCCGGGCCAGTTAGTGAGCATACAGTGGGAACCGTAAGCTGGCAGCAAGGGAATTTGTACCCATCATTCA TGCTATTATCTATTGCTGAGAACTCAACAAATCGTAGTATGCGCATCACTAAAGAAGCTCTCAAGAGTAATCTCTGCTTTCTTCCTGTGCAAACTCAGAT TTACATATGGTACCTTTTACTCTTCAACTTGACGATTTTCGCTCTTCTCATATGGCCGTCAAAGGGTGTAAACTTCGAGCACTACTGGAGTTTCCTAGCG GCATTCCTCCGACCATATAGTATCTTGTTCAGAGGTGGGGCGAAGGAGAAAAGTGATGATGACAATTGCGAGTACGACGTGGTGTGGGATGCTGAAGGAT CGATGCATCTTGTGAAGAAAGCATTAGCCGCCCCTACTACTGCGATTCAAACGGATAATGTTGTCATGGAAGGGAGGAATGCTGTTATGCGCCCAACAGC AAGGAAAAACACCACTCCAGCGGAGGGAGGAGATTTTTCGCTGGAGGTAGACTCGAATGGAGGAGACGGCGATCCGAGTTCAAAAGTACGGTCGAGAACG AGTAGGTCGAGAACGAAAATCGCAATTCAAAGAGTAGTGAGAGCAACCCGGATGGTTATGGTGATAGCTGCAGTAAACGGTACACTATACATGATGTTAC TTTTCAAGGATTCGATGGACCAGTGA
AA sequence Show only first row Show all	>Lus10036645 pacid=23174647 polypeptide=Lus10036645 locus=Lus10036645.g ID=Lus10036645.BGIv1.0 annot-version=v1.0 MKQYHKLTAVLCVVWMITILYGEMLAFWMPSFFSCSWPHHSPSSSSSSSIREEVRIAVLTDPQLMDRTSHPTLPKSLLGTLPKSLLGVGQVYTDIFMRRA FFSSVLPLKPNVILFLGDYFDGGPDLSDAEWQDSLHRLKHVFDLDAKSRDSNIPVFFIPGNHDVGYSSINTHKPEVVGRYEKEFGNRNFWFAIGKMEFIV VDAQTLDGNPQSEITSTAWEFVKNVSEGNDLMPKILLTHIPLYRPDNTHCGPLRNSPIINQRIVRSRAQEIWYQNYLTEESSNKLLDSTKPVLVLSGHDH DQCTVLHDSKSGPVSEHTVGTVSWQQGNLYPSFMLLSIAENSTNRSMRITKEALKSNLCFLPVQTQIYIWYLLLFNLTIFALLIWPSKGVNFEHYWSFLA AFLRPYSILFRGGAKEKSDDDNCEYDVVWDAEGSMHLVKKALAAPTTAIQTDNVVMEGRNAVMRPTARKNTTPAEGGDFSLEVDSNGGDGDPSSKVRSRT SRSRTKIAIQRVVRATRMVMVIAAVNGTLYMMLLFKDSMDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53710			Calcineurin-like metallo-phosp...		Lus10036645 [exp]	0	1
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	1.7	0.8289
AT3G52640			Zn-dependent exopeptidases sup...		Lus10020806 [exp]	5.9	0.8146
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	18.2	0.8224
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	19.9	0.7667
AT3G51130			unknown protein		Lus10014270 [exp]	20.8	0.8140
AT4G10930			unknown protein		Lus10023068 [exp]	21.4	0.8156
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	23.6	0.7808
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	29.6	0.7777
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	29.8	0.8085
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	30.2	0.7819

Compare expression of checked genes

Lus10036645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.