Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62580 312 / 4e-98 ARM repeat superfamily protein (.1) AT1G27210 204 / 2e-57 ARM repeat superfamily protein (.1) AT4G27060 96 / 2e-20 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G59850 63 / 3e-10 ARM repeat superfamily protein (.1) AT2G07170 63 / 5e-10 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033129 [exp] 891 / 0 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10010730 [exp] 245 / 2e-72 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036675 [exp] 209 / 3e-60 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10027590 [exp] 96 / 3e-20 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 83 / 3e-16 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10040047 [exp] 67 / 2e-11 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 57 / 5e-08 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 43 / 0.0008 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G074400 [exp] 504 / 1e-172 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 489 / 7e-167 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 278 / 4e-85 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 277 / 2e-84 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 88 / 6e-18 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 69 / 8e-12 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 51 / 2e-06 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036647 pacid=23174391 polypeptide=Lus10036647 locus=Lus10036647.g ID=Lus10036647.BGIv1.0 annot-version=v1.0 ATGGCGCAAAGCTTCAAGATGAAGGTGCTCACTCTCATCACCAAGCTATCCGACCGGGACACCTACACAGCCGCAGCCGATCAACTTGAGTCAATCGCTG CCACGCTCGACGGCAGCACTCTCCCTACATTCCTCTCTTGCATCCTCTCCACCGACTCCGCCGACAAGGCATTAGTCCGGAAGCAATGCCTCCGTCTCCT ATCTCTCCTCTCGCTCCTCCACTCTAACTCACTCTCTTCCTTCTTGCCTAAGATCATCACCTACCTCACTCGCCGCCTCCGTGACCTTGATTCCTCCATC CGCTCCGAGTGCGTCGCCGCCGTCTCTTCTCTGTCCTCCAATGTAACGAGGCCGCCGTTCTCCTCCGCCTTTCTGAAGCCACTAAGCGAGGCCGTGTTCA CGGAACAGGACCTGAACGCGCAGGTCGGATCTGCTCTGTGTTTGGCTGCCGCGATCGATTCGGCTCCAGATCCGGATCCTGGGAGGTTGGGGAAGGCTCT CGTTACCAGGCTGGAGAGGCTGGTGAAGAACGACGCCTACAAGGCGAAGAGTGCAGGTTTAGTTGTTCTAGGTAGTGTGATCGGAGTGGGAGGAGTGAGG GGATATGGCGGGATGAGTGGTCTGGTTAAGTGCTTGACCGCTTTTCTGAGCCATCAGGATTGGGCTGCTAGAAAAGCTGCTGCTGAAGCGCTTAGTAGAT TGGCGATCGCTGAGAGGGATGCTGTAGCGGAGTTCAAGAGTGATTGCTTGAAAGTTTTCGAGAACCGGAGATTCGACAAGGTCAAAGCAACTAGGGAAGT AATGAGTCAAATGATAGAAGCGTGGAAGCAGGTTCCTGATATATCTGATGAACCATCTCCACCTCCTCGATCACAGGCATCTTCAAGAGATGAAGTTGCT GATGGACGCAATCCACCTTCTGGATCCAGGAAGCCTTACTCTCCTAGTACTGAACCAGCTCAAACAAGAACAAGAGGGGTTCTATCAGCTGTGTGTACTC CTGCTAATGGCTCCTCTTCTAGGAAAAGAGGTCATGTGAAGAGTGCTGACAAGAAAAAGAGCCCAATAATGACCCAGCAACAACTGGATCGGAAGAAGCC CTTGGACTGGAAAGTAGAAGTTACAGTTTCCGATAATTCCTTTACCGGAGTTGGTGATGATACTAGTATGAAGCGGAGAATTGATGATACGCCTCAGAGT CGGCTTACAAAGCCAGAAACAAGGCGAGCTCTTTTCGGTAGGAACTCAGATGAGAAAGCAACCAAATTGAGTGGTTTCAAGTCTGGGTCTCGTGTGGCTC CTCAAGATGATAATGCCAACACAACAGCTGCTACTAATTCTGCTGAGAAGCACAATACCAATCACAAAGACAGTGAAGAATTGAGTTTGATCCGTAGTCA GCTTCTTCAGATCGAAAGGCAACAGTCCAGTCTTCTCGATCTCCTACAGAGATTCATAGGGAGTTCCCAAAATGGGATGAGTTCACTAGAGACACGCGTG CAGGGGCTTGAGTTGGCACTGGATGTGATCTCTTATGACTTGGCGGAATCCAACGGGAGGATAGCTAACAATCATGGAACACCATGTTGCCGAATACCTG GTGCAGATTACTTGAGCTCCAAGTTATGGCGAAAGGGAGAGGACCACCACAATCCAACTACTTGCCGTTCAAGATTTGCTGGCATGCGGCCTAGAGGGGA GAGGGGAAGCAACCATGATGAAACCTTCAACCTGGATAACTGTAGGCTACACCTTCAAAGGCGTGGTGGATTAATCGTGAATCCCTTGGCTGAAATTCAC GACTCGAGGGCCACGTCTGAGATGGGACGACAATGA
AA sequence Show only first row Show all	>Lus10036647 pacid=23174391 polypeptide=Lus10036647 locus=Lus10036647.g ID=Lus10036647.BGIv1.0 annot-version=v1.0 MAQSFKMKVLTLITKLSDRDTYTAAADQLESIAATLDGSTLPTFLSCILSTDSADKALVRKQCLRLLSLLSLLHSNSLSSFLPKIITYLTRRLRDLDSSI RSECVAAVSSLSSNVTRPPFSSAFLKPLSEAVFTEQDLNAQVGSALCLAAAIDSAPDPDPGRLGKALVTRLERLVKNDAYKAKSAGLVVLGSVIGVGGVR GYGGMSGLVKCLTAFLSHQDWAARKAAAEALSRLAIAERDAVAEFKSDCLKVFENRRFDKVKATREVMSQMIEAWKQVPDISDEPSPPPRSQASSRDEVA DGRNPPSGSRKPYSPSTEPAQTRTRGVLSAVCTPANGSSSRKRGHVKSADKKKSPIMTQQQLDRKKPLDWKVEVTVSDNSFTGVGDDTSMKRRIDDTPQS RLTKPETRRALFGRNSDEKATKLSGFKSGSRVAPQDDNANTTAATNSAEKHNTNHKDSEELSLIRSQLLQIERQQSSLLDLLQRFIGSSQNGMSSLETRV QGLELALDVISYDLAESNGRIANNHGTPCCRIPGADYLSSKLWRKGEDHHNPTTCRSRFAGMRPRGERGSNHDETFNLDNCRLHLQRRGGLIVNPLAEIH DSRATSEMGRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	0	1
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	2.8	0.9361
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	3.0	0.9380
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	3.9	0.9311
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	4.9	0.9264
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	8.0	0.8733
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	8.1	0.9263
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	8.7	0.9004
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	9.4	0.9187
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	10.9	0.9218
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	11.5	0.9116

Compare expression of checked genes

Lus10036647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.