Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033128 [exp] 763 / 0 AT1G74860 147 / 1e-38 unknown protein Lus10036649 [exp] 760 / 0 AT1G74860 145 / 3e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350000 [exp] 56 / 3e-08 AT1G19010 106 / 3e-25 unknown protein Potri.017G074300 [exp] 55 / 8e-08 AT1G19010 123 / 7e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036648 pacid=23174570 polypeptide=Lus10036648 locus=Lus10036648.g ID=Lus10036648.BGIv1.0 annot-version=v1.0 ATGAGAAACAAAGAGCCTGAGCTGTACAAAAATGGATGCACTCATAGAATCCGTGCTTTAGAAGGGAATATCTTAGGTGGAAGTCTTCCTATTGTTGAGC AGAATAGTAGTGGAAAACAGCAAATATATAACGGAGATGACAAGGAAGGAAAGCATCCATGTCCCAAACTCACTGTCAAGGATGACATTGCACATGGTTT GGAGAATAACGAAGATGAGTTGAAGATACAAACTGAATCGGGATATATTCACGATTATGCAGTAAAGTCTTTTCGAAGGAAACAGAAAAGAGCTACTAGA TATAGAAAGCGGAAACTGTCTTTTAGGAGGTTTCCTGATCAGAATCTGGACAACAATGTTGAATGTGGAGAAGGCTCAATGAGAATTCAGGGTAAAGATT CTGAATTGGAAGTAGCTAGAAACAAAAGTCCGAACTCAAAGGAAACGGGTTCACAGTCCGGATCGGCCGAAACTACAGAGGTAAATGTGAACTTTCTTAG ACCTGGCTCAATCCAAATTACTGAAACCAATGATACGATGTCGGTGGAAGAGGAGGACCTCAATTCTGTGGAGGGTTTTAAGTCTACAGCTTGTAAATGT GATAATGAGATATTGGTAGACTCAGAACCGAACAAGTTGGAAGCAAATCCACTTTCGAATGAAACGGCTATACAATCTAGATTGGGCGAAGCTAGCAATG ATAAGCTGTCAGCGGAAGAGGAGGATCTTACGTCTGTGGAGGGTTCTGAGTCTCTAGCTAGTAAATGCGATGGTGATATGTTCAGTCTCTTGTTGATAGA CTCAGAACCAATAAAGTCTGAAGCAAATCCACATTCCAATGAAATGGTTATACAGTCTGGAGTGTCTGAAGTTACCGACGGCAATCTGAACTTCCTTAGA CCTTGCTCAGTCCAAAATAGCAGAAGCAGTGATAAGATGTCAGTGGAAGAGGAAGTCAAGTCTATGGAGGGTCCCGAGTCTCTTGGTAGTAAATCGAGTA ATGAGGTTGGCAGCGCAAAGTCAGAGGCAAATGAGTGTGAAGCAAAGGAATCAGTTGGGGTGCAGCCAGTTGTTAGTAAGTTGATAAAGTACACATTCAC AAGGAAACGGAAGAGGGAGTCTCTGACCAGCCCTGATGGGAAATCGGAAATTGATTTGAAGAGAAGGATGGGTGACAAACAAGTTGATTTGAAGGAGTCG GCCAAGGTGGACTAG
AA sequence Show only first row Show all	>Lus10036648 pacid=23174570 polypeptide=Lus10036648 locus=Lus10036648.g ID=Lus10036648.BGIv1.0 annot-version=v1.0 MRNKEPELYKNGCTHRIRALEGNILGGSLPIVEQNSSGKQQIYNGDDKEGKHPCPKLTVKDDIAHGLENNEDELKIQTESGYIHDYAVKSFRRKQKRATR YRKRKLSFRRFPDQNLDNNVECGEGSMRIQGKDSELEVARNKSPNSKETGSQSGSAETTEVNVNFLRPGSIQITETNDTMSVEEEDLNSVEGFKSTACKC DNEILVDSEPNKLEANPLSNETAIQSRLGEASNDKLSAEEEDLTSVEGSESLASKCDGDMFSLLLIDSEPIKSEANPHSNEMVIQSGVSEVTDGNLNFLR PCSVQNSRSSDKMSVEEEVKSMEGPESLGSKSSNEVGSAKSEANECEAKESVGVQPVVSKLIKYTFTRKRKRESLTSPDGKSEIDLKRRMGDKQVDLKES AKVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036648 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	3.5	0.7848
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	6.7	0.7587
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	9.6	0.7834
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	15.3	0.7515
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	15.7	0.7536
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	26.2	0.7343
AT1G35430			unknown protein		Lus10001289 [exp]	26.7	0.7077
AT3G60480			unknown protein		Lus10034728 [exp]	27.2	0.7040
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	33.7	0.7299
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	41.2	0.7133

Compare expression of checked genes

Lus10036648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.