Plant FIBer expression Database

Lus10036649 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19010 142 / 9e-38 unknown protein
AT1G74860 144 / 2e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033128
[exp]
1097 / 0 AT1G74860 147 / 1e-38 unknown protein
Lus10036648
[exp]
759 / 0 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G074300
[exp]
197 / 2e-55 AT1G19010 123 / 7e-31 unknown protein
Potri.001G350000
[exp]
197 / 5e-55 AT1G19010 106 / 3e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10036649 pacid=23174631 polypeptide=Lus10036649 locus=Lus10036649.g ID=Lus10036649.BGIv1.0 annot-version=v1.0
ATGGCCGATTCTGAGAAACTGACTGCGTTGAAGAAAGCCTATGCGGATATAATACTGAACACGGCGAAGGAGGCGGCTGCGAGGGTAATGATGTCTGAGA
GGAAAGCTCAGCGGTACCAGCGGGAGCTATTTGCAGCCAAGGATGAGGCCCTTCGGATGCTTCTCCGGCTCAAGCACATGTTCGATGCTAAGGCCAGTGA
AGCAGAAATCACATCATTGAATCAACAGAAAATAATTGATGAGCTAGAAGCACAACTTGGGGAAGCCGAGGATATAGTTAAAGACCTTAGATCAGAGTTG
AGAGAACTGCAAGATGAGTTGGAGAGGGTTATAACCAATCAAATGCAGCCCTTGCAGGAAGACAATCATGATGGAGGTAATGTTAGCCATATGACATTAA
TGGAGAATAGCACAGTTAGTACTCCAGTGCCTATGGTCTCTTCTTTACCTGTGGCAGAGATTGATCCTGTTGCAGCTACTGAGATCACAAATTCAACTTT
GACTATCTCATACAATGACCACCTGACCAAGCACCGTAGTGATAATGGTTCTCACAAGGATAGTTGTTTTGTTTGTGATCCTGATTTCGCATCTATAATG
ATGAGAAACAAAGAGCCTGACTTGTACAAAAATGGATGCACTCATAGAATCCGTGCTTTAGAAGGGAATATCTTAGGTGGAAGTCTTCCTATTGTTGAGC
AGAACGACGGTGGAAAACAGCAATTATATAACGGAGATGACAAGGAAGGAAAGCATTCATGTCCCAAACTCACTGTCAAGGATGACATTGCACATGGTTT
GGAGAATAACGAAGATGAGTTGAAGATACAAACTGAATCGGGATATATTCACGATTATGCAGTAAAGTCTTTTCGAAGGAAACAGAAAAGAGCTACTAGA
TATAGAAAGCGGAAACTGTCTTTTAGGAGGTTTCCTGATCAGAATCTGGACAGCAATGTTGAATGTGGAGAAGGCCCAATGAGAATTCAGGGTAAAGATT
CTGAATTGGAGGTGGCTAGAAACGAAAGTCTGAACTCAAAGGAAACGGGTACACAGTCGAGATCGGTCGAAGCTACAGAGGTAAATGTGAACTTTCTTAG
ACCTGGCTCAATCCAAATTACTGAAACCAATGATACGATGTCGGTGGAAGAGGAGGACCTCAATTCTGTGGAGGGTTTTAAGTCTACAGCTTGTAAATGT
GATAATGAGATATTGGTAGACTCAGAACTTAACGAGTCAGAAGCAAATCCACTTTCGAATGAAATGGCTATACAGTCTAGATTGGGCGAAGGGACCGAAG
CGAGCAATGATAAGCTGTCAGTGGAAGAGGAGGATCTTACGTCTGTGGAGGGTTCTGAGTCTCTAGCTAGTAAATGCGATGGTGATATGTTCAGTCTCTT
GTTGATAGACTCAGAACCAATAAAGTCTGAAGCAAATCCACATTCCAATGAAATGGTTATACAGTCTAGAGTGTCTGAAGCTACCGACGGCAATCTGAAC
TTTCTTAGTCCTTGCTCAATCGAAAATAGCAGAAGCAGTGATAAGATGTCAGTGGAAGAGGAAGTCAAGTCTATGGAGGGTCCCGAGTCTCTTGGTAGTA
AATCGAGTAATGAGGTTGGCAGCGGAAAGTCAGAGGCGAATGAGTGTGAAGCAAAGGAATCAGTTGGGGTGCAGGCAGTTGTTAGTAAGTTGATAAAGTA
CACATTCACAAGGAAACGGAAGAGGGAGTCTCTGACCAGCCCCCGCCCTGATGGGAAATCGGCAATTGATTTGAAGAGAAGGATGGGTGACAAACAAGTT
GATTTGAAGGAGTCGGCCAAGGTGGACTAG
AA sequence
>Lus10036649 pacid=23174631 polypeptide=Lus10036649 locus=Lus10036649.g ID=Lus10036649.BGIv1.0 annot-version=v1.0
MADSEKLTALKKAYADIILNTAKEAAARVMMSERKAQRYQRELFAAKDEALRMLLRLKHMFDAKASEAEITSLNQQKIIDELEAQLGEAEDIVKDLRSEL
RELQDELERVITNQMQPLQEDNHDGGNVSHMTLMENSTVSTPVPMVSSLPVAEIDPVAATEITNSTLTISYNDHLTKHRSDNGSHKDSCFVCDPDFASIM
MRNKEPDLYKNGCTHRIRALEGNILGGSLPIVEQNDGGKQQLYNGDDKEGKHSCPKLTVKDDIAHGLENNEDELKIQTESGYIHDYAVKSFRRKQKRATR
YRKRKLSFRRFPDQNLDSNVECGEGPMRIQGKDSELEVARNESLNSKETGTQSRSVEATEVNVNFLRPGSIQITETNDTMSVEEEDLNSVEGFKSTACKC
DNEILVDSELNESEANPLSNEMAIQSRLGEGTEASNDKLSVEEEDLTSVEGSESLASKCDGDMFSLLLIDSEPIKSEANPHSNEMVIQSRVSEATDGNLN
FLSPCSIENSRSSDKMSVEEEVKSMEGPESLGSKSSNEVGSGKSEANECEAKESVGVQAVVSKLIKYTFTRKRKRESLTSPRPDGKSAIDLKRRMGDKQV
DLKESAKVD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74860 unknown protein Lus10036649
[exp]
0 1
AT5G07240 IQD24 IQ-domain 24 (.1) Lus10005760
[exp]
2.0 0.7904
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Lus10019537
[exp]
3.2 0.8276
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Lus10007734
[exp]
9.5 0.7844
AT5G18190 Protein kinase family protein ... Lus10011091
[exp]
10.3 0.7996
AT3G13060 ECT5 evolutionarily conserved C-ter... Lus10033335
[exp]
12.1 0.7981
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Lus10034399
[exp]
13.3 0.7747
AT3G02130 TOAD2, RPK2, CL... TOADSTOOL 2, clv3 peptide inse... Lus10031976
[exp]
13.5 0.7510
AT3G52850 VSR1;1, GFS1, B... VACUOLAR SORTING RECEPTOR 1;1,... Lus10014176
[exp]
15.2 0.7795
AT2G17200 DSK2 ubiquitin family protein (.1) Lus10023934
[exp]
15.5 0.7687
AT1G69360 Plant protein of unknown funct... Lus10037122
[exp]
16.1 0.7864

Lus10036649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.