Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74850 502 / 6e-170 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 140 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 138 / 2e-34 GUN1 genomes uncoupled 1 (.1) AT2G35130 132 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39980 128 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18110 122 / 4e-29 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16390 119 / 4e-28 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT2G41720 118 / 8e-28 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G11690 115 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09820 114 / 1e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033127 [exp] 687 / 0 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 134 / 6e-33 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 133 / 9e-33 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 130 / 6e-32 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016009 [exp] 126 / 1e-30 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018318 [exp] 126 / 1e-30 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012268 [exp] 126 / 2e-30 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038788 [exp] 124 / 8e-30 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10003424 [exp] 122 / 4e-29 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069100 [exp] 563 / 0 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.002G193900 [exp] 140 / 2e-35 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.013G032600 [exp] 137 / 1e-34 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 137 / 1e-34 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G297300 [exp] 137 / 5e-34 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 134 / 2e-33 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.012G123600 [exp] 133 / 4e-33 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G118500 [exp] 133 / 6e-33 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G045000 [exp] 132 / 7e-33 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 132 / 7e-33 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036651 pacid=23174573 polypeptide=Lus10036651 locus=Lus10036651.g ID=Lus10036651.BGIv1.0 annot-version=v1.0 ATGACAATCTCGCCGTCGCTTTTCATCCTCAATTCTCCTTCTATCTCCGCCGAACTCTTCAGGCTTGAGCCTAGTCGCCGCAGAACTCCTTTCCCCTGCT TCCCCGCTCACCGACGGTTATTCTCTTTCGCTGACGATCACAAGACGTCCCTCTCCCTTGTAAAAACTAAAGCCAAGAGGAAGGAACTCATTCTCGCCAA TCCTTCCTTCGAAGTCGAGGAAGGTAAGTACACTTACGAAGTTGAAACAGTTATTAACAAGCTATGCAGCCTTCCACCGCGAGGCAGCATAGCTCGCTGC TTGGACAGCTTCAAGAGCAAGCTTTCCTTGAACGATTTCGCTTTGGTGTTCAAGGAGTTCGCCCAGCGCGGGGACTGGCAGCGCTCTCTCAGGTTGTTCA AATATATGCAGCGCCAGATCTGGTGTAAGCCAAACGAGCACATTTACACCATCATCATTAGTCTGTTAGGCAGGCAAGGCCTTCTGGATAAGTGCGCTGA GATATTCGAAGAAATGCCTACTCACGGCGTGGCACGCAGCGTCTTCTCCTACACGGCTTTGATCAATTCTTATGGCCGTCAAGGAGGGCTTCATGAAGAT GCTAAGAAGATTTTACTTCATATGAATGAAAATGACATGATGCCAAGTTCAAAGACATTTACAGGAGTTATTGAAGCTTATGGACAAGCTGCGTTGTATG AAGAGGCCTTTGTTGCATTTAATACAATGAATGAATTGCAAGTCAGTCCAACTCTCGAGACGTACAATTCGTTAGTTAACATGTATGCAAGAGGTGGGTT GTACAAGGAATGTGAAGTAATATTGCGGAAAATGGGTGAAGCTGGAGTTGTAAGAAATAGGGATTCTGTCAATGGTTTAATAGAAGGTTACAGACAAGGT GGCAAGTTCGAAGAAGCTATCAAAGCTTATGTTGAGATGGAACAGTGGAGAATCGATCCCGATGAACAGACTCTCGAGGCAGTTCTGAGTGTGTACAGTG TTGCAGGTCTAGTTGAGGAGTGCAAGGAGCAGTTCAAAGAGATCAAATCATCAGGGATATTGCCTAGTGTCATCTGCTACTGTATGATGTTAGCTGTTTA TGCAAAAAGCGACAGATGGAGTGATGCTTATGAGCTACTTAATGAGATGCTTACTCATAGGGTGTCAAATGTTCATCAAGTGATTGGTCAGTTGATCAAG GGAGAATACGACGATGAGTCTAACTGGCAAATGGTGGAGTTTGTGTTTGACAGACTTAGTTCTGAAGGATGTGGCTTGGGAATGATGTTTTACAACACCC TTCTAGAAGCACTTTGGTGGCTTGGACAGAAACAACGGGCGGCAAAGGTGCTAAGAGAAGCAACAAAGAGAGGTCTATTCCCAGAATTATATCGCAAAAG CAAACTTGTGTGGTCTGTGGATGTGCACAGGCTATGGGAAGGGGGTGCATATACAGCAGTATCCGTTTGGCTGAATAACATGTTTGAGAGTTTCATTAAT GGTGAAGATCTTCCGCAACTTGCATCAATAGTTGTCGTGTAA
AA sequence Show only first row Show all	>Lus10036651 pacid=23174573 polypeptide=Lus10036651 locus=Lus10036651.g ID=Lus10036651.BGIv1.0 annot-version=v1.0 MTISPSLFILNSPSISAELFRLEPSRRRTPFPCFPAHRRLFSFADDHKTSLSLVKTKAKRKELILANPSFEVEEGKYTYEVETVINKLCSLPPRGSIARC LDSFKSKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGRQGLLDKCAEIFEEMPTHGVARSVFSYTALINSYGRQGGLHED AKKILLHMNENDMMPSSKTFTGVIEAYGQAALYEEAFVAFNTMNELQVSPTLETYNSLVNMYARGGLYKECEVILRKMGEAGVVRNRDSVNGLIEGYRQG GKFEEAIKAYVEMEQWRIDPDEQTLEAVLSVYSVAGLVEECKEQFKEIKSSGILPSVICYCMMLAVYAKSDRWSDAYELLNEMLTHRVSNVHQVIGQLIK GEYDDESNWQMVEFVFDRLSSEGCGLGMMFYNTLLEALWWLGQKQRAAKVLREATKRGLFPELYRKSKLVWSVDVHRLWEGGAYTAVSVWLNNMFESFIN GEDLPQLASIVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	0	1
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	1.7	0.9482
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	5.7	0.9437
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	7.7	0.9377
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	8.9	0.9355
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	9.8	0.9294
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	10.0	0.9304
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	12.0	0.9035
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	12.2	0.9105
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	13.7	0.9282
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	15.6	0.9074

Compare expression of checked genes

Lus10036651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.