Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 468 / 3e-160 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 437 / 2e-148 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G62310 240 / 8e-68 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 232 / 6e-65 Protein kinase superfamily protein (.1) AT1G48490 223 / 5e-62 Protein kinase superfamily protein (.1.2.3) AT1G45160 219 / 9e-61 Protein kinase superfamily protein (.1.2) AT5G09890 206 / 6e-59 Protein kinase family protein (.1.2) AT4G33080 201 / 6e-57 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 200 / 1e-56 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G10540 198 / 3e-56 3-phosphoinositide-dependent protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033125 [exp] 787 / 0 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 453 / 1e-149 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 377 / 1e-127 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 262 / 5e-81 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033126 [exp] 240 / 5e-76 ND / Lus10014181 [exp] 228 / 4e-68 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 233 / 3e-65 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 231 / 2e-64 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 230 / 4e-64 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073700 [exp] 587 / 0 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 470 / 5e-161 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 466 / 2e-159 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 234 / 2e-65 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 226 / 1e-62 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.012G127800 [exp] 223 / 5e-62 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 223 / 6e-62 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 218 / 2e-60 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 201 / 7e-57 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.014G028900 [exp] 200 / 2e-56 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036653 pacid=23174352 polypeptide=Lus10036653 locus=Lus10036653.g ID=Lus10036653.BGIv1.0 annot-version=v1.0 ATGGTGTCGGCGTCTCAGAAGAAGAACCTCCGAGACTCTCTCTTGTCCACCAACCTCAAGAAGCTCACCATTACCCCTCCGAATTCCACCTCCGAGTCTG CTTCCGACTTTGACTTTTCCGACGTTTTCGGCCCAACTACTCCTCATCCACCTCCCAACCCGGATCCGGACCATGACCTGGATGCTTCCTCATCCTCCGC CTCCACCTCTTCATCCCCCTCTTCTGCTCCCACGGCGGCAGCAGCACCAGCCACGGTGGACCCACTTGTCATCCACAACCGGTCCCACTCCTTCGTGGGG CCCTCCCCTCGCTTCACCCTCTCCGTCCCTCTCCCCTTCACCAATATTCTGGAAGAAGAAGATGACGGCGAAGAAGAAGACGAAGCCTCATCCACCACCA AAATTGAGGCTGGTGGTACCGGCGTCGTCGAATGCCAGAAGAAGGAAGATGGAGAGGATGGAAGCAATTGCAACGGGAGGATCGGGCCTGGTGATTTTGA GATACTGAGAATGGTAGGTCAGGGAGCGTTTGGGAAGGTGTTTCTGGTGAAGAGGAAGAAGCAGAAGCTTGGCAATGGCGATGGGATTTTCGCAATGAAA GTGATGAGGAAAGACAACATAATCAAGAAGAATCATGTGGATTACATGAGAGCTGAGAGGGATATTCTCACTAAAGTCATCCATCCTTTCATCGTCCAGC TTCGTTACTCTTTCCAGACCAAAACAAAGCTTTATTTAATCCTTGATTTCATAAACGGAGGCCATCTCTTCTTCCACCTCTATCGTCAAGGGATCTTCAG TGAGGATCAGGCGAGGCTTTATGCTGCTGAGATTGTCTCTGCTGTTTCACACCTCCATGATTGCGGGATTGTGCATCGAGATCTAAAGCCTGAAAATATT CTCTTGGATGTTGATGGACATGTTATGCTAACTGATTTTGGACTCGCAAAGGAGATTGATGAGTCCAGCAGGTCCAATTCAATGTGTGGGACTACTGAAT ACATGGCTCCAGAAATCTTACTCTCTAAAGGCCACAATAAAGATGCAGATTGGTGGAGTGTGGGAATTCTCTTGTATGAAATGTTAGCTGGACAGCCTCC ATATACACACCAGAATAGGAAAAAGCTCCAGGAAAAGATCATCAAAGAGAAGATCAAACTACCACCTCTGATAAGCAGTGAGGGTCATTCTCTGCTTAAA GGGTTGCTGCAAAAGGATCCTTCAAAAAGGCTAGGTAATGGACCAGGCGGAGGGGGTGACATTAAACATCACAAATGGTTCAAGTCGATCAACTGGAAAA AATTGGAGGCAAGGGAACTACAGCCTAAATTCGTACCAGTTGTGAGTGGGAAGGAGTGCACTAGCAATTTTGACAAGTGTTGGACAAGTATGCCTGTCGA TGACTCACCAGCTTCCACTCCAACGGCAGGCGAATATTTCCAAGAGAGGCAAATGGGGAGCAAGGAGAGGAGCAGCAACTCACTCTGTGAGAAGTCGATG AAGATGGTGGTGAATATTATGAGGCTGTCTTCGTTTTCTATAGCTAAGATGAGCCTTGGAACAGCTGGTTCTGGAACTCCAGTTGTAAACAGGAACCTTG CAACACCACCCATGATGATCACAAACTCTGTCGTGGGTACCAAGGAACCGTTGCTGCTGCCTCAAATTCCGGGCAGTCAAAGGTCACAAGAACCACAGAC AAGGTCAAAGCACAAGTCTTTTCTGATGGACCCAGCAGGGAAAGGGAAGGGTTCTTCTTCTTCTTCTTCTTCTTCTTCATCGTGCATGGTTCATGAAGAG AGCAGCATTATAGATGGCAAGGCCTCCGACTACATCAGGAAGGTGCATGAGAAGAACCGGAACGATGCCTCAAAACTTGCTCCGTTGATTTTGCCTCCGC CTCCTCGAAAACTGCGGTACTAA
AA sequence Show only first row Show all	>Lus10036653 pacid=23174352 polypeptide=Lus10036653 locus=Lus10036653.g ID=Lus10036653.BGIv1.0 annot-version=v1.0 MVSASQKKNLRDSLLSTNLKKLTITPPNSTSESASDFDFSDVFGPTTPHPPPNPDPDHDLDASSSSASTSSSPSSAPTAAAAPATVDPLVIHNRSHSFVG PSPRFTLSVPLPFTNILEEEDDGEEEDEASSTTKIEAGGTGVVECQKKEDGEDGSNCNGRIGPGDFEILRMVGQGAFGKVFLVKRKKQKLGNGDGIFAMK VMRKDNIIKKNHVDYMRAERDILTKVIHPFIVQLRYSFQTKTKLYLILDFINGGHLFFHLYRQGIFSEDQARLYAAEIVSAVSHLHDCGIVHRDLKPENI LLDVDGHVMLTDFGLAKEIDESSRSNSMCGTTEYMAPEILLSKGHNKDADWWSVGILLYEMLAGQPPYTHQNRKKLQEKIIKEKIKLPPLISSEGHSLLK GLLQKDPSKRLGNGPGGGGDIKHHKWFKSINWKKLEARELQPKFVPVVSGKECTSNFDKCWTSMPVDDSPASTPTAGEYFQERQMGSKERSSNSLCEKSM KMVVNIMRLSSFSIAKMSLGTAGSGTPVVNRNLATPPMMITNSVVGTKEPLLLPQIPGSQRSQEPQTRSKHKSFLMDPAGKGKGSSSSSSSSSSCMVHEE SSIIDGKASDYIRKVHEKNRNDASKLAPLILPPPPRKLRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	0	1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	1.7	0.8670
AT5G17070			unknown protein		Lus10008757 [exp]	2.0	0.8605
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10024033 [exp]	2.6	0.8502
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	4.0	0.8554
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	9.9	0.8342
AT1G27461			unknown protein		Lus10007752 [exp]	14.4	0.7636
AT2G17787			unknown protein		Lus10017274 [exp]	15.1	0.8580
AT2G34540			unknown protein		Lus10042827 [exp]	15.5	0.7917
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	16.6	0.8526
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	17.4	0.7992

Compare expression of checked genes

Lus10036653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.