Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11010 418 / 5e-146 Pre-mRNA cleavage complex II protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033124 [exp] 661 / 0 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10014756 [exp] 585 / 0 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033870 [exp] 194 / 2e-60 AT5G11010 142 / 9e-41 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10015355 [exp] 55 / 6e-08 AT3G04680 674 / 0.0 CLP-similar protein 3 (.1.2) Lus10007269 [exp] 51 / 1e-06 AT3G04680 571 / 0.0 CLP-similar protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073500 [exp] 509 / 0 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3) Potri.017G077200 [exp] 51 / 8e-07 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1 CL0023 [flax] [poplar] P-loop_NTPase PF03205 [flax] [poplar] MobB Molybdopterin guanine dinucleotide synthesis protein B
Representative CDS sequence Show only first row Show all	>Lus10036655 pacid=23174386 polypeptide=Lus10036655 locus=Lus10036655.g ID=Lus10036655.BGIv1.0 annot-version=v1.0 ATGCCTTCCCTATCGGCGCCGGAAGAGTCGTCATCGTCCCCGACCATATGCATTCCCGACGAGTGGGCGGCGGCTGGTGACACTATTGCCTTTTACTCCA ACAACACTCTTCCTCCTATCGCCCTTATTTGTGGCGCCAAAAACTGTGGCAAAACCACCTTCTCCCGTTACCTCCTCAACGTTCTTCTCCGCAGATATAG AAGAGTGGGATACTTGGACACCGATGTTGGGCAACCTGAGTTTACTACTCCTGGTTTCTTATCCCTCACGGTGGTTGATGAACTAACTCTAGATTTGACG ATTCCCTGCTTAAAGAGACCTGAGAGATGCTTTTTCTTTGGCGACACTTCTTCAAAACGGGATCCTACAAGCTACCTGAAGTATATATCTGCACTTTATG ACTACTACCGCAAGGAGTATTGCACCTATGACACTACTAATAGTTCTTCTGAGAGAGGATTGCCTCTGGTAGTCAACACACCTGGTTGGGTGAAGGGTGT TGGTTATGATATACTGGTGGACATGTTGAGATATATTGCACCCACTCATGTGGTCAAGATAGATACATTTGCAGCTAGAAAGAATCTACCAGCTGGGAAA TTTTGGATAGTTGGTGATGCTGACACGGAGGTTAATCTAATTGAAATTAGTTCAGCTAATCAGGACTCTTTCAATAGATCGGTGCTTGTGAAAAAGGATG CTCATCTTTTGCGGGATCTGCGGATAATGGCATATTTCAGACAGTGCTTTCCTGGTACCTTGAACGTTAATACAATCAAGGAACTTGCTAATGCCCTTGC TTCTCATCCTCCTTATCAAGTTCCCACATCGAGTATTAAGATCAGGCATCTTTATTGCCAGGTACCTCAAGCGGAAGTCTTCTATAGTTTGAATGCTACT ATTGTTGGTTTGGCCAACAGTTCTGAGCAGGCAGGAACTCTACCGTGGTGTCTCGGTCTCGGGATAGTGAGAGGAATCGATACTGTGAAAGGGTTGCTTT ACATAATCACACCAGTTCCACAGAGCACCCTGGAAAATGTTGATCTACTACTGCAGGGATTCATCGAGATACCTACTTGTTTGTTGCAGGTCCAAGGATG TATGTCACCTTACATGTCTACAAATGTTTTACCCATAAGTTAA
AA sequence Show only first row Show all	>Lus10036655 pacid=23174386 polypeptide=Lus10036655 locus=Lus10036655.g ID=Lus10036655.BGIv1.0 annot-version=v1.0 MPSLSAPEESSSSPTICIPDEWAAAGDTIAFYSNNTLPPIALICGAKNCGKTTFSRYLLNVLLRRYRRVGYLDTDVGQPEFTTPGFLSLTVVDELTLDLT IPCLKRPERCFFFGDTSSKRDPTSYLKYISALYDYYRKEYCTYDTTNSSSERGLPLVVNTPGWVKGVGYDILVDMLRYIAPTHVVKIDTFAARKNLPAGK FWIVGDADTEVNLIEISSANQDSFNRSVLVKKDAHLLRDLRIMAYFRQCFPGTLNVNTIKELANALASHPPYQVPTSSIKIRHLYCQVPQAEVFYSLNAT IVGLANSSEQAGTLPWCLGLGIVRGIDTVKGLLYIITPVPQSTLENVDLLLQGFIEIPTCLLQVQGCMSPYMSTNVLPIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	0	1
AT1G15420			unknown protein		Lus10030351 [exp]	1.7	0.9187
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	1.7	0.8861
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	2.0	0.8835
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	3.2	0.8825
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	5.3	0.8576
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	6.0	0.9021
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	6.3	0.8789
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	6.9	0.8653
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	7.5	0.8799
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	8.1	0.8167

Compare expression of checked genes

Lus10036655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.