Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18990 366 / 2e-120 Protein of unknown function, DUF593 (.1) AT1G74830 349 / 8e-114 Protein of unknown function, DUF593 (.1) AT1G08800 88 / 7e-18 Protein of unknown function, DUF593 (.1.2) AT5G16720 87 / 1e-17 Protein of unknown function, DUF593 (.1) AT2G30690 81 / 1e-15 Protein of unknown function, DUF593 (.1) AT1G70750 65 / 9e-11 Protein of unknown function, DUF593 (.1) AT3G54740 56 / 3e-08 Protein of unknown function, DUF593 (.1.2) AT5G06560 54 / 2e-07 Protein of unknown function, DUF593 (.1) AT4G13630 52 / 1e-06 Protein of unknown function, DUF593 (.1.2) AT1G04890 51 / 1e-06 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033123 [exp] 878 / 0 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 85 / 8e-17 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 81 / 9e-16 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10006566 [exp] 81 / 2e-15 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 76 / 5e-14 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 75 / 7e-14 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 75 / 1e-13 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 74 / 1e-13 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 65 / 1e-10 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073400 [exp] 392 / 2e-129 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 339 / 6e-111 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 95 / 5e-20 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 92 / 2e-19 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 92 / 4e-19 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 77 / 2e-14 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 71 / 1e-12 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 67 / 2e-11 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 66 / 4e-11 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 66 / 5e-11 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10036656 pacid=23174492 polypeptide=Lus10036656 locus=Lus10036656.g ID=Lus10036656.BGIv1.0 annot-version=v1.0 ATGGCAGCACAGAGAACATTCAAAGGTTTTGTAGAACAAGAACTTGGCAAGATCCCACACTTTGTTATCTATGCATTGTTGGAGTGGTTCTTGATTCTGG TCCTCTTGCTTGATGCCTCCCTCTCATTTTTCGCCAACGAATATGCCAAGTTCTTCGAGCTGAGAATCCCTTGCCTGCTTTGTACGAGGATCAACCACAT CTTTCTCCACAAAAAACATCGTGACCAGTACCTCAACGACACCCTCTGCGATTCCCACAGGAAGTGCGTATCCAGCCTGGCATATTGCCACATCCACAAG AAACTCTCTGATATCAGGACAATGTGCGAAGGATGCCTTCTCTCTTTTGCTACCGAGAAAGAATCCGGATCGTCAGACACCTACAAGTCTCTTGTTGGCA TCCTCCACAAGGACATTGAGCTCTTCTTCGACGACGACCACAAAGATATCCCATTGCCTCCCGGAAAGAGGGACGACGTTGTGGTCCCTGCAGATAAGAG CCACATTCATCGATGCTCATGCTGCGGAGGGCCATTGAAAGGTGGGAAATCAAAGGGGAAGAACGCCTCGTCTTCCTTCGTACAAGCTCCTACTCCATCT CCAAGAGCATCAGCACCTCTTCGCCATCTCGACTTGCCCCCTGTTCGATACCCGGACCTCAAGTTCCCGGATAATGACTCGGAGATTGATGAATCAGCAA GAAAAGAAGTGAAAGGAGGAGCATCATTTGATGAGATGAATGAAGAGAGGACTCCTTCGTTTTTAAGAGGGCAAAACAAGTTCTTTGGCATCCCACTCAC AGATTCAGCAACCACAACTCCTAGATGGGCTATAAGGTGCCCTAAGAAATCAACACTGGACAAGGCTGAATTTGCCTCTTCGGAGCCTGCAGAAAGCGGG AGCGAGATTGCTATAGCTACTGAGCAAGATGGGGACTCAATCCTCAACCACTTGAGGAGGCAGGTTCGCTTGGACCGCAAGTCACTGATGGATCTATACA TGGAGCTGGACGAAGAGAGGAATGCTTCAGCTGTTGCAGCAAACAACGCAATGGCCATGATCACGAGGCTGCAGGCTGAGAAGGCAGCTGTCCAAATGGA AGCATTGCAGTACCAGAGGATGATGGAAGAGGAGGCCGAGTACGATGAAGAAGCGATACAATTACTGAGGGATGAGCTGAGAAAGAAGGACAGACACGTA AAGCACCTGGTGAACGAAATCGAGGCTTACAGAATCAAGTATGGTGATCTGACAGAAGCTGGTTTTGTGATGGATGATGAGGAGGATTACCTTGAAATGG ATGAGAGATCGGAGTTTGCCACCCCAACGTATATCTCTACTGAAGGGAAAAGCCTTGGAGGAAGGAGCAGTAGTTTTAACAGCAATGGGTCTACTTCTTC TAAATATCTAATGAGGAGTGCAAGTGGAAGGGACAGATCAGAGAAGATTAATAATCAGAGTGAGAATGTTGGAGGAGGGGATCAGGGGACTAAGGGCTCT AGCAAATTCGGTGGACTTCGCCGGCTGAAGCACTTGGAGAAGAAGCAGCAGGGTTCATCATCAGATGACGAGACAGAACAAGAGATCAGAATGAATATGA GGAATGACGTAAGCCATCTGCGTGCAAGGGTAAGAACAGTGGAAGAAGAGGATGATTTCTTCAGAGATGATGAACTTTTTGTAGAGGTAGACAATGGAAG TGAGAAGCTTGCGTCCCCATCTGATGACTGA
AA sequence Show only first row Show all	>Lus10036656 pacid=23174492 polypeptide=Lus10036656 locus=Lus10036656.g ID=Lus10036656.BGIv1.0 annot-version=v1.0 MAAQRTFKGFVEQELGKIPHFVIYALLEWFLILVLLLDASLSFFANEYAKFFELRIPCLLCTRINHIFLHKKHRDQYLNDTLCDSHRKCVSSLAYCHIHK KLSDIRTMCEGCLLSFATEKESGSSDTYKSLVGILHKDIELFFDDDHKDIPLPPGKRDDVVVPADKSHIHRCSCCGGPLKGGKSKGKNASSSFVQAPTPS PRASAPLRHLDLPPVRYPDLKFPDNDSEIDESARKEVKGGASFDEMNEERTPSFLRGQNKFFGIPLTDSATTTPRWAIRCPKKSTLDKAEFASSEPAESG SEIAIATEQDGDSILNHLRRQVRLDRKSLMDLYMELDEERNASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEEAEYDEEAIQLLRDELRKKDRHV KHLVNEIEAYRIKYGDLTEAGFVMDDEEDYLEMDERSEFATPTYISTEGKSLGGRSSSFNSNGSTSSKYLMRSASGRDRSEKINNQSENVGGGDQGTKGS SKFGGLRRLKHLEKKQQGSSSDDETEQEIRMNMRNDVSHLRARVRTVEEEDDFFRDDELFVEVDNGSEKLASPSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	0	1
					Lus10001257 [exp]	1.4	0.8941
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	1.7	0.9004
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	2.4	0.8855
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	2.8	0.8774
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	3.2	0.8612
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10007503 [exp]	3.5	0.8081
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10006219 [exp]	3.6	0.8037
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	4.2	0.8191
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	8.1	0.8287
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10026273 [exp]	8.3	0.7442

Compare expression of checked genes

Lus10036656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.