Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18980 227 / 3e-75 RmlC-like cupins superfamily protein (.1) AT1G18970 224 / 2e-74 GLP4 germin-like protein 4 (.1) AT1G09560 207 / 1e-67 GLP5 germin-like protein 5 (.1) AT1G02335 195 / 6e-63 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G62020 190 / 9e-61 GLP10 germin-like protein 10 (.1.2) AT1G74820 188 / 6e-60 RmlC-like cupins superfamily protein (.1) AT3G05930 185 / 7e-59 GLP8 germin-like protein 8 (.1) AT5G26700 182 / 9e-58 RmlC-like cupins superfamily protein (.1) AT3G05950 179 / 3e-56 RmlC-like cupins superfamily protein (.1) AT3G04200 174 / 2e-54 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038014 [exp] 199 / 2e-64 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10009254 [exp] 190 / 2e-60 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2) Lus10026962 [exp] 182 / 8e-58 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 182 / 2e-57 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 181 / 2e-57 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 181 / 3e-57 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 181 / 4e-57 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 181 / 4e-57 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 181 / 5e-57 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068200 [exp] 279 / 8e-96 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 211 / 5e-69 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 207 / 9e-68 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.014G110400 [exp] 206 / 3e-67 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 201 / 5e-65 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.011G163800 [exp] 184 / 2e-58 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 181 / 2e-57 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 181 / 2e-57 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 176 / 2e-55 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 176 / 2e-55 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10036658 pacid=23174564 polypeptide=Lus10036658 locus=Lus10036658.g ID=Lus10036658.BGIv1.0 annot-version=v1.0 ATGATTTCACATTCTTCCTGTTGTTTCACGCTCTGTATATTGATTCTGAAGCTTCTTCTCCTCTTTCTAAATATAACTTCAGCTGATCCTGACCCACTGC AGGACTTCTGTGTAGCTGATTTGAACTCCACCCAGTTCATGATCAGCGGCTTCCCATGCAAACCTGCGGCACAAGTAACTTCGAAGGATTTCTTCTTCGA TGGGCTGAGCAAAGAAGGAAACACATCCAACATCTTTGGTTCCTTTGTGAACACAGGTAATGTTCTTGCCTTCCCTGGACTCAACACCCTAGGCCTGTCG ATGAACCGGGTTGATATTGCCCCCGGTGGATTAAACCCACCACACTTGCATCCACGGGCAACAGAAGCAGGGGTGGTGATCCAAGGGAAGGTCCTTGTAG GGTTTGTGAGTACAGTGGGTGTGTACTACTCAAAAATTTTGAATGATGGAGAGATGTTTGTGATCCCAAAGGGACTGGTTCACTTCCAGATGAATGTTGG AGATGAGAATGCCATAATGATCACATCTTTCAACAGCCAGCTCCCCGGTGCCGTGGTTGTCCCCTTAGCTCTATTTGCTGCAACGCCTTCTGTTCATGAC CAAGTGTTGGCCAAATCATTCCTTGTTGGAGAAGACGTCATAAACACAATCAAGGCCAAGTTCAACTCTCCTGCTGGCTAA
AA sequence Show only first row Show all	>Lus10036658 pacid=23174564 polypeptide=Lus10036658 locus=Lus10036658.g ID=Lus10036658.BGIv1.0 annot-version=v1.0 MISHSSCCFTLCILILKLLLLFLNITSADPDPLQDFCVADLNSTQFMISGFPCKPAAQVTSKDFFFDGLSKEGNTSNIFGSFVNTGNVLAFPGLNTLGLS MNRVDIAPGGLNPPHLHPRATEAGVVIQGKVLVGFVSTVGVYYSKILNDGEMFVIPKGLVHFQMNVGDENAIMITSFNSQLPGAVVVPLALFAATPSVHD QVLAKSFLVGEDVINTIKAKFNSPAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	0	1
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	2.0	0.9177
AT4G12070			unknown protein		Lus10031828 [exp]	3.9	0.8938
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	5.7	0.8946
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	7.4	0.8830
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10019686 [exp]	8.3	0.9208
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	9.5	0.8714
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	13.7	0.8785
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	15.1	0.8826
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	16.1	0.8822
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	17.0	0.8617

Compare expression of checked genes

Lus10036658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.