Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62610 234 / 1e-76 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 204 / 4e-65 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT3G07340 155 / 5e-44 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 150 / 5e-42 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 147 / 1e-41 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 146 / 1e-41 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G68920 147 / 5e-41 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G34530 139 / 3e-39 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G10120 137 / 7e-38 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 133 / 3e-37 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033120 [exp] 459 / 2e-165 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013284 [exp] 238 / 2e-78 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030807 [exp] 238 / 3e-78 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013052 [exp] 158 / 9e-45 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 155 / 2e-43 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 144 / 8e-41 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030581 [exp] 148 / 6e-40 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 147 / 7e-40 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10002337 [exp] 140 / 1e-38 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068100 [exp] 313 / 7e-108 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G072700 [exp] 312 / 2e-107 AT5G62610 228 / 4e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G040000 [exp] 220 / 2e-71 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 200 / 3e-63 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.002G248500 [exp] 158 / 1e-44 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 155 / 2e-43 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 155 / 2e-43 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G104900 [exp] 145 / 7e-41 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G113200 [exp] 147 / 3e-40 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.010G136100 [exp] 143 / 6e-39 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036659 pacid=23174683 polypeptide=Lus10036659 locus=Lus10036659.g ID=Lus10036659.BGIv1.0 annot-version=v1.0 ATGGATCCTCCGCTCATAAATGAGTCCTCTTTCTCCCCGGCCAACCCTGCTTCTTACTCCTTGGCTGAGATTTGGCCCTTTCATGTTCAAGGAGCCGCCC CTGCTGGAGGTGGTGGTGGCTTGGGCCTCCGTATGAGCAATTTTGGGTTTTCTGTTGGAGACCGAGATGGCTCTGCAGAGGAATCCACCGTCACAGACCA GAGCGCCGGCGCCGGAAGGAAGCGGAGGGATTTCAGCTCTGAGGATGAGTCTTCTAGGATGGTTTCTACTACCAGCAGTGGCAATGAATTGAATGAATCC AAGAATAAGCGGATGAAGCAATCAGGGTCCAGAAATGAAACTGATAACTCCAACCCAGCTGCTGCGCAACGTAAACCGTCTGAGCCGCCTAAGCAAGATT TCATTCATGTAAGAGCAAGAAGGGGACAAGCCACTGATAGCCACAGTCTAGCTGAAAGAGCTAGGCGAGAAAAGATAAGTGAGAGGATGAAGCTACTCCA GGATTTGGTGCCTGGTTGTAATAAGCAATATCTGCTTTGTGTTTTCTATTTCTTCAATGACAAGGTAATTGGTAAGGCACTGGTCCTTGATGAGATTATA AATTATATCCAGTCATTACAACGTCAGGTTGAGTTCCTGTCGATGAAGCTAGAGGCTGTGAATGCGAGGATGAGCATGAACCTGACCATGGACAGCTTCA ATCCTAAAGATATTGGATCCCGGCCATTCGATGCTAATGGGATGATGTATGGGCAACAAGCAACTAGAGACTATGTGCAAGGACCACAAGAAGAATGGTT ACACATGCAGGTTGGTGGTGGTTTTGAAAGATCAGCTTGA
AA sequence Show only first row Show all	>Lus10036659 pacid=23174683 polypeptide=Lus10036659 locus=Lus10036659.g ID=Lus10036659.BGIv1.0 annot-version=v1.0 MDPPLINESSFSPANPASYSLAEIWPFHVQGAAPAGGGGGLGLRMSNFGFSVGDRDGSAEESTVTDQSAGAGRKRRDFSSEDESSRMVSTTSSGNELNES KNKRMKQSGSRNETDNSNPAAAQRKPSEPPKQDFIHVRARRGQATDSHSLAERARREKISERMKLLQDLVPGCNKQYLLCVFYFFNDKVIGKALVLDEII NYIQSLQRQVEFLSMKLEAVNARMSMNLTMDSFNPKDIGSRPFDANGMMYGQQATRDYVQGPQEEWLHMQVGGGFERSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	0	1
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	2.8	0.9099
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	3.0	0.9172
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	3.5	0.9084
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	7.7	0.8918
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	8.8	0.8904
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	9.4	0.9059
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	12.2	0.8880
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	12.4	0.8865
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	13.4	0.9013
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	15.4	0.8699

Compare expression of checked genes

Lus10036659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.