Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01290 265 / 2e-88 CNX3 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033117 [exp] 382 / 9e-136 AT1G01290 249 / 2e-83 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099500 [exp] 290 / 8e-99 AT1G01290 283 / 3e-96 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01967 [flax] [poplar] MoaC MoaC family
Representative CDS sequence Show only first row Show all	>Lus10036661 pacid=23174424 polypeptide=Lus10036661 locus=Lus10036661.g ID=Lus10036661.BGIv1.0 annot-version=v1.0 ATGACAGGGGACAGCGGCGACATCTTGGCCGTCAGTGGTGGCTTCGTCAACATCGGTGGAGACGGCTACGCGTTTCTACTAGGTACACTCTGCAGCAAAA CACGTTTCTGCACCTATCCACATGAAGAGGTACAGACTGTTCCAGATCTGATTCCAGGAATCAAACAAGCTATGCTCCGTAAGATTCTACTATTTTATTC CCCTTCTACCTACACAATCAAAGCACGGGATCCTGAAATGGAAGTTGTCTTCGGTGAAGCTCCTCCCAGTGGACTTGCTGGTTCTATTAGCAGAGATCAT CTTTCTGAACAACAGCTTCAGGTCATACCTCAAGACCTTCCATGTTCTGTTACCAAACCTCATAAGGCAGAAGGTCAACAGATAGCCGGTTTGACCCACA TTGACCGTAAAGGAGAATCTCAGATGGTGGATGTGTCTCCCAAGCACTCAACCAAGAGAATTGCAGTGGCCAGTTGCAAGGTGATACTGGGGAAGAAGGT GTTTGATATGGTCCTAGCTAACCAAATGGCTAAAGGAGATGTCCTCACAGTGGCTAAGATTGCCGGGATCAATGGAGCAAAGCAGACCAGCACCCTGATC CCACTTTGTCATAACATTGTCTTGAGTCATGCCCGAGTTGATCTCAGGCTGAATCCCAAGGATCACAGCGTGGATATCGAAGGGGAAGCTGCATCAACGG GGAAGACTGGAGTCGAAATGGAAGCGCTAACGGCTGTTTCCACTGCTGGTCTAACAGTGTATGATATGTGCAAGGCTGCTTCTAAGGACATCCAGATCGT GAATATCCAGCTTGAGCGTAAAACCGGTGGGAAAACTGGAGATTGGTCCAGGGATAACAAAAGATAA
AA sequence Show only first row Show all	>Lus10036661 pacid=23174424 polypeptide=Lus10036661 locus=Lus10036661.g ID=Lus10036661.BGIv1.0 annot-version=v1.0 MTGDSGDILAVSGGFVNIGGDGYAFLLGTLCSKTRFCTYPHEEVQTVPDLIPGIKQAMLRKILLFYSPSTYTIKARDPEMEVVFGEAPPSGLAGSISRDH LSEQQLQVIPQDLPCSVTKPHKAEGQQIAGLTHIDRKGESQMVDVSPKHSTKRIAVASCKVILGKKVFDMVLANQMAKGDVLTVAKIAGINGAKQTSTLI PLCHNIVLSHARVDLRLNPKDHSVDIEGEAASTGKTGVEMEALTAVSTAGLTVYDMCKAASKDIQIVNIQLERKTGGKTGDWSRDNKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	0	1
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	2.4	0.9340
AT3G14880			unknown protein		Lus10042453 [exp]	8.8	0.9377
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	10.0	0.8842
					Lus10018421 [exp]	19.9	0.9270
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	20.7	0.9269
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	21.7	0.9265
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10019159 [exp]	22.4	0.9065
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	25.3	0.8821
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	27.7	0.8998
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	28.4	0.9260

Compare expression of checked genes

Lus10036661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.