Plant FIBer expression Database

Lus10036662 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74790 868 / 0 catalytics (.1)
AT5G62630 778 / 0 HIPL2 hipl2 protein precursor (.1)
AT5G39970 757 / 0 catalytics (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033116
[exp]
1174 / 0 AT1G74790 926 / 0.0 catalytics (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G067200
[exp]
947 / 0 AT1G74790 915 / 0.0 catalytics (.1)
Potri.017G075800
[exp]
881 / 0 AT5G39970 837 / 0.0 catalytics (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07995 GSDH Glucose / Sorbosone dehydrogenase
Representative CDS sequence
>Lus10036662 pacid=23174524 polypeptide=Lus10036662 locus=Lus10036662.g ID=Lus10036662.BGIv1.0 annot-version=v1.0
ATGGCAGCTCTTCTTGCTATTCTCAATCTGTTCTTGGTACTTTTGATGCTTCCTGATCCTTCATTCTCTCATCCTTTGTGTACTGATTCCAGGGCTCCTA
TTACCTTGAACGCCACACTGAGTTTTTGTCCCTACAATGGAAGCTCCTGCTGCAATTCAGCACAAGATTCCCAATTGGCCAAACAGTTTCAGGCCATGAA
CGTTTCTAATCCTGGATGTGCTTCTCTACTCAAATCAATACTTTGCTCGAGATGCGATCCATTTTCAGCGGAGTTGTTTCTGGCAAATCCGGTGCCACGT
ACTGTTCCAGTTCTCTGCAACTCAACTGTTTCAGCTACTTCATCTCAATCTAGCCAAGGAGACGTCAACTTCTGCTCTAAACTGTGGGATACGTGTCAAA
ATGCCTCCATCTTCAACTCTCCCTTTGCACCTTCACTAGCAGGACAAGCTGGACTACCAGCCACCTCCAATTTCACCAAGCTAACAGATCTCTGGCAGTC
CAAATCGGATTTCTGCAGCGCATTTGGTGGCGAATCCGCTCAAGGCTCAGCCTGCTTTGATGGTGAACCCGTCAAACTTAATAATACTGGATCATCACCT
ACTTCCCCCCCACCAAATGGCCTCTGCCTTGAGAAAATTGGCAATGATTCCTATCTCAACATGGCAGCTCATCCGGATGGCTCCAACCGTGCCTTTTTTG
CCAACCAGCCTGGTCAAATATGGCTCGCAACGATTCCTGACCAAGGGTCCAAGGGAATTTTGGGAATTGACGAGGCCAGCCCTTTTATTGATCTAACTGA
TGTGGTTAATTACGATACTGAATTCGGGATGATGGGCATTGCATTCCATCCAAACTTCGCGCAGAATGGCAGGCTTTTCGCATCTTTCAACTGCGATAAG
GTCAAGTGGCCGGGATGCAATGGACGGTGTTCTTGCAACTCCGACGTGAATTGTGATCCTTCAAAGCTGGCTCCTGATAATGGTGCTCAGCCTTGCCAGT
ATCAAACTGTTGTTGCAGAGTACAGTGCTAATGGCTCCTCAACAAGTCCTTCCTCGGCTACATCTGCAAAACCGGTAGAGGTGAGGAGGATATTCACAAT
GGGACTTCCTTTCAGATCACACCATGCAGGACAGATTCTCTTTGGACCTCAAGATGGTTATCTCTACTTCATGATGGGAGATGGAGGCGGGACAGGTGAT
CCTTACAACTTTGCGCAGGACAAGAAATCATTGCTGGGAAAGATCATGCGCCTTGATGTCGATAACTTCCCAAGTGCTGAAGAAATCACAAACAACAGCC
GTTGGGGAAACTACTCTATCCCTAGTGATAACCCGTACAAAGAAGACGATGATATGCAGCCCGAGATCTGGGCTACGGGACTCAGAAATCCTTGGCGCTG
CAGTTTCGATGCAGCTAGGCCATCCTACTTTCTCTGTGCAGATGTTGGGCAGGATCACTATGAAGAGGTTGATTTGATCACCAAGGGAGGAAACTACGGT
TGGCGAGTTTACGAGGGAAACAATGCTTACAAACCTCCTGCATCTCCCGGGGGAAACACACTTCCTAGCTCAATCAACCCAATCTACCCAATTATGGGAT
ACAACCACTCCAATGTGAACAAGAATGAAGGCTCAGCTTCGATCACTGGGGGTTATTTCTACCGCTCCCAGACTGATCCGTGCATGTATGGAAAGTACTT
GTATGCCGATTTGTACGCCAGTTCCATGTGGACAGGAACCGAAACACCGGAATATAGTGGCAACTTCACAGCCAATACAATTCCTTTCAGTTGTGCAAAA
GACTCTCCTATCCCATGCACCTCTGTTCCAGGAAGTGACTTCCCATCATTGGGCTACATTTTCTCCTTCGGCCAGGATAACCGCAATGATGTTTACCTCC
TAGCCAGCAGTGGTGTTTACAGAGTCGTACCTCCGAGCCGCTGCAATTATGTGTGCTCCAAGGAAAATGCAACAGCAGCTGCTGGTAATAGCCCCGGTTC
TGCTTCTTCACCACGCGCATCGTCGACAACTCAGCTACAAAGCCGATTCAACATCCGAGTTGTACTCCTGCTGTCTTCCTTGTTGCTCCTTCTGATTGGT
TCTATTTAG
AA sequence
>Lus10036662 pacid=23174524 polypeptide=Lus10036662 locus=Lus10036662.g ID=Lus10036662.BGIv1.0 annot-version=v1.0
MAALLAILNLFLVLLMLPDPSFSHPLCTDSRAPITLNATLSFCPYNGSSCCNSAQDSQLAKQFQAMNVSNPGCASLLKSILCSRCDPFSAELFLANPVPR
TVPVLCNSTVSATSSQSSQGDVNFCSKLWDTCQNASIFNSPFAPSLAGQAGLPATSNFTKLTDLWQSKSDFCSAFGGESAQGSACFDGEPVKLNNTGSSP
TSPPPNGLCLEKIGNDSYLNMAAHPDGSNRAFFANQPGQIWLATIPDQGSKGILGIDEASPFIDLTDVVNYDTEFGMMGIAFHPNFAQNGRLFASFNCDK
VKWPGCNGRCSCNSDVNCDPSKLAPDNGAQPCQYQTVVAEYSANGSSTSPSSATSAKPVEVRRIFTMGLPFRSHHAGQILFGPQDGYLYFMMGDGGGTGD
PYNFAQDKKSLLGKIMRLDVDNFPSAEEITNNSRWGNYSIPSDNPYKEDDDMQPEIWATGLRNPWRCSFDAARPSYFLCADVGQDHYEEVDLITKGGNYG
WRVYEGNNAYKPPASPGGNTLPSSINPIYPIMGYNHSNVNKNEGSASITGGYFYRSQTDPCMYGKYLYADLYASSMWTGTETPEYSGNFTANTIPFSCAK
DSPIPCTSVPGSDFPSLGYIFSFGQDNRNDVYLLASSGVYRVVPPSRCNYVCSKENATAAAGNSPGSASSPRASSTTQLQSRFNIRVVLLLSSLLLLLIG
SI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74790 catalytics (.1) Lus10036662
[exp]
0 1
AT1G74790 catalytics (.1) Lus10033116
[exp]
3.5 0.9353
AT5G49760 Leucine-rich repeat protein ki... Lus10007587
[exp]
5.3 0.9285
AT5G24530 DMR6 DOWNY MILDEW RESISTANT 6, 2-ox... Lus10000711
[exp]
5.5 0.9271
AT5G47550 Cystatin/monellin superfamily ... Lus10010495
[exp]
10.4 0.9029
AT3G12160 AtRABA4d ARABIDOPSIS THALIANA RAB GTPAS... Lus10023829
[exp]
10.7 0.9028
AT5G40780 LHT1, LTH1 lysine histidine transporter 1... Lus10022329
[exp]
11.2 0.9196
AT3G05660 AtRLP33 receptor like protein 33 (.1) Lus10002214
[exp]
13.9 0.9203
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10036296
[exp]
15.2 0.9202
AT1G23440 Peptidase C15, pyroglutamyl pe... Lus10029137
[exp]
15.4 0.9156
AT2G37240 Thioredoxin superfamily protei... Lus10013051
[exp]
17.5 0.9030

Lus10036662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.