Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74780 410 / 5e-138 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 389 / 8e-130 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 385 / 1e-128 Major facilitator superfamily protein (.1) AT2G34350 379 / 6e-126 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G28120 162 / 4e-43 Major facilitator superfamily protein (.1) AT2G39210 153 / 6e-40 Major facilitator superfamily protein (.1) AT5G14120 130 / 6e-32 Major facilitator superfamily protein (.1) AT4G34950 129 / 1e-31 Major facilitator superfamily protein (.1) AT2G16660 127 / 3e-31 Major facilitator superfamily protein (.1) AT3G01930 125 / 9e-31 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033115 [exp] 660 / 0 AT1G74780 619 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10042170 [exp] 361 / 5e-119 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10014640 [exp] 160 / 3e-42 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 157 / 2e-41 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 157 / 3e-41 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 152 / 1e-39 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 144 / 1e-36 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 134 / 2e-33 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 125 / 1e-30 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067000 [exp] 437 / 3e-148 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.005G112400 [exp] 172 / 4e-47 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.012G072101 [exp] 145 / 9e-41 AT1G74780 0 / 1 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.009G006400 [exp] 154 / 2e-40 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 153 / 3e-40 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 145 / 5e-37 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 143 / 2e-36 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 137 / 1e-34 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 126 / 1e-30 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 124 / 4e-30 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10036663 pacid=23174602 polypeptide=Lus10036663 locus=Lus10036663.g ID=Lus10036663.BGIv1.0 annot-version=v1.0 ATGGGCAGCCACTGTAGCCGGAATCTGGATCCAATGTGTTGTCGGAGCCTCCTACACCTTCGGCATCTACTCCTCCGTCCTCAAGACCACCCAAGCCTAC GACCAATCCACCCTCGACACCGTCTCCGTCTTCAAGGATATCGGCTCCAACGCCGGCATCCTATCTGGCCTTCTCTACTCCTACGTCACCTCTCTGCCCT TCTCTCCTCCGCCTCCCCCGCCCGTCCAAGCGGCGGCGGGCCGTGGGTGGTTTACGCCGTCGGTGCCGTTCAGTGCTTCGTCGGATACTTTATGATGTGG GCCTCCGTCGTGGGCGTGATTCCGCCACTTCCCGTGCCGGCGATGTGCTTGTTCATGTGGCTGGCCGCCCACGCTCAGACTTTCTTCAACACCGCCAACG TTGTCACCGGCGTTCACAACTTCGGCGACTATGGCGGGACCATCGTCGGGATTATGAAGGGGTTTCTTGGTCTAAGTGGAGCAATCCTAATTCAATTGTA CAACGTGGTATGCAAGGACAGTCCAAGCACATTCCTTCTCCTCCTGGCAATCACCCCAACTCTAACCTCCCTCCTCCTCATGCTTCTTGTCAGAAACTAC GACACCATTTCCCCCGCCGACAAGCACCACCTCAACTCCTTCTCCGCCTTCGCCCTCTCCATCGCAGCCTACCTCGCCGCCCTCATCCTCCTCGACAATG TCCTCACCCTCCCTTATTGGGCCCGCACATTGTCCTTCCTCATACTCCTCTTCATCCTCATCACCTCTCCCTTGACCACCGCCCTTAAAGCCCACCTCCA CGAATCTGACATCCTCGCTCGCGCGTTGCTCGAGGAGAGCGGCGCCAAGAAGCAACCACTCATTAATGATATCGTCGAAGCAGACAACAACGGCAATAAT GATATTATTAATGATGGTGATGATGATCATCATCACGACGTGAATATGGTGGAAGCATTGTGCAGGCTAGACTTCTGGCTGCTTTTCTTGGCCGTGTTCT GCGGGCTAGGATCAGGAGTCGCAACAATCAACAACATTAGCCAGGTGGGCGAGTCGTTGGGATACACGACCGTGGCGACCAACTCGTTGGTCTCCTTATG GAGCATATGGAACTTCCTGGGGAGGTTCGGGGCCGGGTACATGTCGGATTCCCTCCTATACAAAGGCGGATGGGCCCGACCCCTGCTTATGGCCGTCACC CTAGCGACCATGGCGATGGGTCACATCGTCATAGCTTCCGGGCTGCCTGCATGTCTGTACGTTGGGTCAGTCCTGGTGGGGGTTTCGTACGGGTCGCAAT GGTCGCTGATGCCAACCATATGCTCCGAGATATTCGGGGTGGCGCACATGGGGACCATTTTCAACACCATAGCGGTGGCTAGTCCTCTCGGGTCTTATGT TTTCTCGGTGAGGGTCATTGGGTATCTTTATGATCGTCAGGTGGCCGGGAATAATAAGGACGAGGACGCGGGGGAATGCGTGGGGACTCGATGTTTCATG ATGTCGTTTTTAATAATGGCGTCCATGGCTTTCTTCGGGTCTTTAGTGGCTGTCGGGTTGTTCTTCCGGACTCGCCGATTTTATCGGGTGGTTGTGCTGC GGAGGCTCAAGCGGATGCAACTGTCTTAG
AA sequence Show only first row Show all	>Lus10036663 pacid=23174602 polypeptide=Lus10036663 locus=Lus10036663.g ID=Lus10036663.BGIv1.0 annot-version=v1.0 MGSHCSRNLDPMCCRSLLHLRHLLLRPQDHPSLRPIHPRHRLRLQGYRLQRRHPIWPSLLLRHLSALLSSASPARPSGGGPWVVYAVGAVQCFVGYFMMW ASVVGVIPPLPVPAMCLFMWLAAHAQTFFNTANVVTGVHNFGDYGGTIVGIMKGFLGLSGAILIQLYNVVCKDSPSTFLLLLAITPTLTSLLLMLLVRNY DTISPADKHHLNSFSAFALSIAAYLAALILLDNVLTLPYWARTLSFLILLFILITSPLTTALKAHLHESDILARALLEESGAKKQPLINDIVEADNNGNN DIINDGDDDHHHDVNMVEALCRLDFWLLFLAVFCGLGSGVATINNISQVGESLGYTTVATNSLVSLWSIWNFLGRFGAGYMSDSLLYKGGWARPLLMAVT LATMAMGHIVIASGLPACLYVGSVLVGVSYGSQWSLMPTICSEIFGVAHMGTIFNTIAVASPLGSYVFSVRVIGYLYDRQVAGNNKDEDAGECVGTRCFM MSFLIMASMAFFGSLVAVGLFFRTRRFYRVVVLRRLKRMQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74780			Nodulin-like / Major Facilitat...		Lus10036663 [exp]	0	1
AT4G21620			glycine-rich protein (.1.2)		Lus10011230 [exp]	6.4	0.8449
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	7.3	0.8330
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	9.2	0.8287
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	11.0	0.8155
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	19.0	0.8322
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	29.7	0.8216
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	38.5	0.7987
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	39.9	0.8038
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	41.9	0.7707
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	42.6	0.8123

Compare expression of checked genes

Lus10036663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.