Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47870 173 / 7e-52 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT3G13850 111 / 8e-29 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G72980 106 / 2e-27 AS2 LBD7 LOB domain-containing protein 7 (.1) AT5G66870 105 / 2e-26 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT5G63090 102 / 3e-26 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 101 / 4e-26 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G31320 97 / 2e-24 AS2 LBD4 LOB domain-containing protein 4 (.1) AT1G65620 96 / 2e-23 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G28500 96 / 2e-23 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G30130 95 / 2e-23 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033111 [exp] 483 / 1e-173 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10008629 [exp] 371 / 2e-129 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10042187 [exp] 171 / 1e-52 AT3G47870 47 / 4e-06 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10003789 [exp] 111 / 9e-29 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 110 / 1e-28 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10002513 [exp] 108 / 1e-27 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10031769 [exp] 103 / 4e-27 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10031191 [exp] 103 / 7e-27 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10027676 [exp] 101 / 1e-25 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072000 [exp] 278 / 1e-93 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.015G066700 [exp] 268 / 1e-89 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.003G039700 [exp] 117 / 4e-30 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.001G196400 [exp] 110 / 4e-28 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.005G134900 [exp] 105 / 2e-26 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.007G039500 [exp] 105 / 3e-26 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.005G097800 [exp] 101 / 3e-26 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 100 / 5e-26 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 100 / 1e-25 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.015G082200 [exp] 100 / 1e-25 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10036665 pacid=23174403 polypeptide=Lus10036665 locus=Lus10036665.g ID=Lus10036665.BGIv1.0 annot-version=v1.0 ATGACGTTGAAGGGTGGCACAAGCCACGCCTGTGCAGCGTGCAAGTATCAGAGGCGGAAGTGCACCTCCGAATGTCAGCTTGCCCCTTACTTCCCTGCAA ACAGACCTGAAACCTTCAGGAACGCTCACAAGCTATTCGGCGTCAGGAACATCGTCAAGATACTCGAGAAACTGGACCACCACCAGCGCCAGGAGGCCAT GCAATCCATCATTTGGCAGGCTAACATCCGGGACATCTACCCTGTCCGCGGCTGTCTAGATTACATCTATGCCCTCCAATACAAGATTCACCAGGCCCAG GAGGATCTCCATGCTGTCCACTCTCAGCTCCAGATCTACCGCCATCAACACCCTTTCCCTGACGAGGACATGGTACCACTACCCTCCTTCCAGCTGCAAC TTGGGATGGCTCCTCCTGCTGCAGCCACTACTAACGCCCTCTCCCTTTTCGGTGAAAACCCTCAACCTTATGTTGCTGGTGGACCTCCCGAACAAGTGGT GGCTCTCCAGTCCCCGGATCTCCAGCATTCCTACTGTATGAGCAGCAATAATAATGTGGTGGGAGGAGGAGGAGGAGGCTACAGCTCTGGTTACTTGGAC AACAAAGATAATGCAGTAGGGAATTCTTTCTGGCTTCACCATAACTATGGCATTAACAACGACGAGGTCATCAATTCTTCCAACATGGGTCTTCAGCCTC ATCCACTGGGTATCCAGCAGGAATTGGTTCATGACTATGATGAGATGCATCCGTTTTTCGATACAATCGACGACAGGCAATCTTACATTGACTCCACCAA AGAGGCTTATGATACAAGCTCGGAAGAGTCTATCAAGGACACAACGCAGTCCCTCGAACATGTTGTGGAGAACGAGCTAAAAAGTGCAGCAGCATGCTTC AGCCTCACCAGTGTCAATTGA
AA sequence Show only first row Show all	>Lus10036665 pacid=23174403 polypeptide=Lus10036665 locus=Lus10036665.g ID=Lus10036665.BGIv1.0 annot-version=v1.0 MTLKGGTSHACAACKYQRRKCTSECQLAPYFPANRPETFRNAHKLFGVRNIVKILEKLDHHQRQEAMQSIIWQANIRDIYPVRGCLDYIYALQYKIHQAQ EDLHAVHSQLQIYRHQHPFPDEDMVPLPSFQLQLGMAPPAAATTNALSLFGENPQPYVAGGPPEQVVALQSPDLQHSYCMSSNNNVVGGGGGGYSSGYLD NKDNAVGNSFWLHHNYGINNDEVINSSNMGLQPHPLGIQQELVHDYDEMHPFFDTIDDRQSYIDSTKEAYDTSSEESIKDTTQSLEHVVENELKSAAACF SLTSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	0	1
					Lus10002266 [exp]	2.4	0.9476
AT1G17930			Aminotransferase-like, plant m...		Lus10020970 [exp]	5.2	0.8961
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	5.5	0.9308
					Lus10008816 [exp]	8.5	0.9374
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	9.4	0.9315
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	9.7	0.8320
					Lus10010481 [exp]	9.9	0.9316
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	10.2	0.8844
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	10.6	0.9269
AT1G15260			unknown protein		Lus10037547 [exp]	12.0	0.9211

Compare expression of checked genes

Lus10036665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.